Luiz Gadelha

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Marta MattosoProfessor of Computer Science, COPPE, Fed University Rio de JaneiroVerified email at cos.ufrj.br
Michael WildeSoftware Architect, Argonne National Laboratory and Fellow, Computation Institute, University of ChicagoVerified email at mcs.anl.gov
Ian T. FosterUniversity of Chicago and Argonne National LaboratoryVerified email at anl.gov
Kary OcañaNational Laboratory of Scientific Computing (LNCC)Verified email at lncc.br
Carla OsthoffLaboratório Nacional de Computação CientíficaVerified email at lncc.br
Fabio PortoNational Laboratory of Scientific ComputingVerified email at lncc.br
Artur ZivianiNational Laboratory for Scientific Computing (LNCC), BrazilVerified email at lncc.br
Pedro MeirellesAssistant Professor at Federal University of BahiaVerified email at ufba.br
Fabiano ThompsonFederal University of Rio de Janeiro (UFRJ)Verified email at biologia.ufrj.br
Ana Tereza Ribeiro de VasconcelosLaboratório Nacional de Computação CientíficaVerified email at lncc.br
Lucas CruzLaboratório Nacional de Computação CientíficaVerified email at lncc.br
Micaella CoelhoMestranda, Laboratório Nacional de Computação CientíficaVerified email at lncc.br
Eduardo DalcinInstituto de Pesquisas Jardim Botânico do Rio de JaneiroVerified email at jbrj.gov.br
Eduardo Krempser da SilvaFundação Oswaldo CruzVerified email at fiocruz.br
Marinez Ferreira de SiqueiraPesquisadora do Jardim Botânico do Rio de JaneiroVerified email at jbrj.gov.br
Raquel L. CostaVerified email at lncc.br
Helio José Corrêa BarbosaLaboratorio Nacional de Computação Cientifica LNCC/MCTI and Dept. de Ciencia da ComputaçãoVerified email at lncc.br
Pedro Correia de SiracusaMSc. Student, National Laboratory for Scientific ComputingVerified email at lncc.br
Rodrigo Leão de MouraProfessor Adjunto, Instituto de Biologia, Universidade Federal do Rio de JaneiroVerified email at biologia.ufrj.br
Rodolfo ParanhosInstituto de Biologia, UFRJVerified email at biologia.ufrj.br

Luiz Gadelha

German Human Genome-Phenome Archive, DKFZ - LNCC

Verified email at lncc.br

Scientific data management scientific workflows provenance reproducibility


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Baseline assessment of mesophotic reefs of the Vitória-Trindade Seamount Chain based on water quality, microbial diversity, benthic cover and fish biomass data PM Meirelles, GM Amado-Filho, GH Pereira-Filho, HT Pinheiro, ... PloS one 10 (6), e0130084, 2015	61	2015
Provenance management in Swift LMR Gadelha Jr, B Clifford, M Mattoso, M Wilde, I Foster Future Generation Computer Systems 27 (6), 775-780, 2011	43	2011
A survey of biodiversity informatics: Concepts, practices, and challenges LMR Gadelha Jr, PC de Siracusa, EC Dalcin, LAE da Silva, DA Augusto, ... Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery 11 (1 …, 2021	36	2021
Kairos: an architecture for securing authorship and temporal information of provenance data in grid-enabled workflow management systems LMR Gadelha Jr, M Mattoso 2008 IEEE Fourth International Conference on eScience, 597-602, 2008	33	2008
MTCProv: a practical provenance query framework for many-task scientific computing LMR Gadelha, M Wilde, M Mattoso, I Foster Distributed and Parallel Databases 30, 351-370, 2012	30	2012
Model-R: a framework for scalable and reproducible ecological niche modeling A Sánchez-Tapia, MF de Siqueira, RO Lima, FSM Barros, GM Gall, ... Latin American High Performance Computing Conference, 218-232, 2017	19	2017
GeNNet: an integrated platform for unifying scientific workflows and graph databases for transcriptome data analysis RL Costa, L Gadelha, M Ribeiro-Alves, F Porto PeerJ 5, e3509, 2017	19*	2017
SiBBr: uma infraestrutura para coleta, integração e análise de dados sobre a biodiversidade Brasileira L Gadelha, P Guimarães, AM Moura, D Drucker, E Dalcin, G Gall, ... Anais do VIII Brazilian e-Science Workshop, 37-44, 2014	18*	2014
Provenance Query Patterns for {Many-Task} Scientific Computing LMR Gadelha Jr, M Mattoso, M Wilde, I Foster 3rd USENIX Workshop on the Theory and Practice of Provenance (TaPP 11), 2011	18	2011
SISS-geo: leveraging citizen science to monitor wildlife health risks in Brazil M Chame, HJC Barbosa, LMR Gadelha Jr, DA Augusto, E Krempser, ... Journal of Healthcare Informatics Research 3 (4), 414-440, 2019	16	2019
A lightweight middleware monitor for distributed scientific workflows SMS da Cruz, FN da Silva, LMR Gadelha Jr, MCR Cavalcanti, ... 2008 Eighth IEEE International Symposium on Cluster Computing and the Grid …, 2008	16	2008
Bioinfoportal: a scientific gateway for integrating bioinformatics applications on the brazilian national high-performance computing network KACS Ocaña, M Galheigo, C Osthoff, LMR Gadelha Jr, F Porto, ... Future Generation Computer Systems 107, 192-214, 2020	14	2020
BaMBa: towards the integrated management of Brazilian marine environmental data PM Meirelles, LMR Gadelha Jr, RB Francini-Filho, RL de Moura, ... Database 2015, bav088, 2015	12	2015
BioWorkbench: a high-performance framework for managing and analyzing bioinformatics experiments ML Mondelli, T Magalhães, G Loss, M Wilde, I Foster, M Mattoso, D Katz, ... PeerJ 6, e5551, 2018	11	2018
Exploring provenance in high performance scientific computing LMR Gadelha, M Wilde, M Mattoso, I Foster Proceedings of the first annual workshop on High performance computing meets …, 2011	11	2011
Workflows Community Summit 2022: A Roadmap Revolution RF da Silva, RM Badia, V Bala, D Bard, PT Bremer, I Buckley, ... arXiv preprint arXiv:2304.00019, 2023	10	2023
New perspectives on analysing data from biological collections based on social network analytics PC de Siracusa, LMR Gadelha Jr, A Ziviani Scientific reports 10 (1), 3358, 2020	8	2020
Provenance traces of the swift parallel scripting system LMR Gadelha Jr, M Wilde, M Mattoso, I Foster Proceedings of the Joint EDBT/ICDT 2013 Workshops, 325-326, 2013	8	2013
MAW: the reproducible Metabolome Annotation Workflow for untargeted tandem mass spectrometry M Zulfiqar, L Gadelha, C Steinbeck, M Sorokina, K Peters Journal of Cheminformatics 15 (1), 32, 2023	7	2023
Avaliação de Desempenho de um Workﬂow Cientíﬁco para Experimentos de RNA-Seq no Supercomputador Santos Dumont L Cruz, M Coelho, L Gadelha, K Ocana, C Osthoff Anais Estendidos do XXI Simpósio em Sistemas Computacionais de Alto …, 2020	7	2020

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