Bingqing Xie
Bingqing Xie
Post doctoral scholar, University of Chicago
Verified email at medicine.bsd.uchicago.edu
Title
Cited by
Cited by
Year
DEEPre: sequence-based enzyme EC number prediction by deep learning
Y Li, S Wang, R Umarov, B Xie, M Fan, L Li, X Gao
Bioinformatics 34 (5), 760-769, 2018
1252018
Systematic comparison of high-throughput single-cell and single-nucleus transcriptomes during cardiomyocyte differentiation
A Selewa, R Dohn, H Eckart, S Lozano, B Xie, E Gauchat, R Elorbany, ...
Scientific reports 10 (1), 1-13, 2020
362020
Lynx: a database and knowledge extraction engine for integrative medicine
D Sulakhe, S Balasubramanian, B Xie, B Feng, A Taylor, S Wang, ...
Nucleic acids research 42 (D1), D1007-D1012, 2014
282014
XPO1 inhibitor selinexor overcomes intrinsic ibrutinib resistance in mantle cell lymphoma via nuclear retention of IκB
M Ming, W Wu, B Xie, M Sukhanova, W Wang, S Kadri, S Sharma, J Lee, ...
Molecular cancer therapeutics 17 (12), 2564-2574, 2018
212018
The functional domains for Bax∆ 2 aggregate-mediated caspase 8-dependent cell death
A Mañas, S Wang, A Nelson, J Li, Y Zhao, H Zhang, A Davis, B Xie, ...
Experimental cell research 359 (2), 342-355, 2017
182017
High-throughput translational medicine: challenges and solutions
D Sulakhe, S Balasubramanian, B Xie, E Berrocal, B Feng, A Taylor, ...
Systems Analysis of Human Multigene Disorders, 39-67, 2014
142014
Disease gene prioritization using network and feature
B Xie, G Agam, S Balasubramanian, J Xu, TC Gilliam, N Maltsev, ...
Journal of Computational Biology 22 (4), 313-323, 2015
122015
A machine learning based lecture video segmentation and indexing algorithm
D Ma, B Xie, G Agam
Document recognition and retrieval XXI 9021, 90210V, 2014
112014
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources
D Sulakhe, M D’Souza, S Wang, S Balasubramanian, P Athri, B Xie, ...
Briefings in bioinformatics 20 (5), 1754-1768, 2019
92019
An integrative computational approach for prioritization of genomic variants
I Dubchak, S Balasubramanian, S Wang, C Meyden, D Sulakhe, ...
PLoS One 9 (12), e114903, 2014
82014
Lynx: a knowledge base and an analytical workbench for integrative medicine
D Sulakhe, B Xie, A Taylor, M D'Souza, S Balasubramanian, ...
Nucleic acids research 44 (D1), D882-D887, 2016
62016
Prediction of candidate genes for neuropsychiatric disorders using feature-based enrichment
B Xie, G Agam, D Sulakhe, N Maltsev, B Chitturi, TC Gilliam
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
62012
Conditional random field for candidate gene prioritization
B Xie, G Agam, N Maltsev, C Gilliam
Proceedings of the International Conference on Bioinformatics, Computational …, 2013
52013
Chemokine expression in the early response to injury in human airway epithelial cells
B Xie, B Laxman, S Hashemifar, R Stern, TC Gilliam, N Maltsev, SR White
Plos one 13 (3), e0193334, 2018
42018
Lynx web services for annotations and systems analysis of multi-gene disorders
D Sulakhe, A Taylor, S Balasubramanian, B Feng, B Xie, D Börnigen, ...
Nucleic acids research 42 (W1), W473-W477, 2014
42014
XPO1 inhibitor selinexor overcomes ibrutinib resistance in mantle cell lymphoma via nuclear retention of IκB
YL Wang, M Ming, B Xie, M Sukhanova, W Wang, S Kadri, S Sharma, ...
Blood 130 (Supplement 1), 3837-3837, 2017
32017
Boosting based text and non-text region classification
B Xie, G Agam
Document Recognition and Retrieval XVIII 7874, 787416, 2011
22011
High Throughput RNA Sequencing of Mice Retina Reveals Metabolic Pathways Involved in the Gut-Retina Axis
U Nadeem, B Xie, A Movahedan, M D’Souza, H Barba, N Deng, ...
bioRxiv, 2020
12020
Unique somatic variants in the DNA from urine exosomes of bladder cancer patients
X Zhou, P Kurywchak, K Wolf-Dennen, SPY Che, D Sulakhe, M D’Souza, ...
Molecular Therapy-Methods & Clinical Development, 2021
2021
Characterizing the tumor microenvironment of metastatic ovarian cancer by single-cell transcriptomics
S Olalekan, B Xie, R Back, H Eckart, A Basu
Cell Reports 35 (8), 109165, 2021
2021
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