| A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014 | 1815 | 2014 |
| HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ... Nucleic acids research 46 (D1), D252-D259, 2018 | 877 | 2018 |
| EpiFactors: a comprehensive database of human epigenetic factors and complexes YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ... Database 2015, bav067, 2015 | 314 | 2015 |
| HOCOMOCO: a comprehensive collection of human transcription factor binding sites models IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ... Nucleic acids research 41 (D1), D195-D202, 2013 | 291 | 2013 |
| HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ... Nucleic acids research 44 (D1), D116-D125, 2016 | 271 | 2016 |
| Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 159 | 2020 |
| Jaccard index based similarity measure to compare transcription factor binding site models IE Vorontsov, IV Kulakovskiy, VJ Makeev Algorithms for Molecular Biology 8, 1-11, 2013 | 94 | 2013 |
| Landscape of allele-specific transcription factor binding in the human genome S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ... Nature communications 12 (1), 2751, 2021 | 90 | 2021 |
| From binding motifs in ChIP-Seq data to improved models of transcription factor binding sites I Kulakovskiy, V Levitsky, D Oshchepkov, L Bryzgalov, I Vorontsov, ... Journal of bioinformatics and computational biology 11 (01), 1340004, 2013 | 82 | 2013 |
| Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study G Ambrosini, I Vorontsov, D Penzar, R Groux, O Fornes, DD Nikolaeva, ... Genome biology 21, 1-18, 2020 | 65 | 2020 |
| HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors IE Vorontsov, IA Eliseeva, A Zinkevich, M Nikonov, S Abramov, A Boytsov, ... Nucleic Acids Research 52 (D1), D154-D163, 2024 | 56 | 2024 |
| PERFECTOS-APE-predicting regulatory functional effect of SNPs by approximate P-value estimation IE Vorontsov, IV Kulakovskiy, G Khimulya, DD Nikolaeva, VJ Makeev International Conference on Bioinformatics Models, Methods and Algorithms 2 …, 2015 | 41 | 2015 |
| CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods Genome biology 25 (1), 53, 2024 | 33 | 2024 |
| EpiFactors 2022: expansion and enhancement of a curated database of human epigenetic factors and complexes D Marakulina, IE Vorontsov, IV Kulakovskiy, A Lennartsson, F Drabløs, ... Nucleic Acids Research 51 (D1), D564-D570, 2023 | 32 | 2023 |
| Multiple single nucleotide polymorphisms in the first intron of the IL2RA gene affect transcription factor binding and enhancer activity AM Schwartz, DE Demin, IE Vorontsov, AS Kasyanov, LV Putlyaeva, ... Gene 602, 50-56, 2017 | 31 | 2017 |
| Genome-wide map of human and mouse transcription factor binding sites aggregated from ChIP-Seq data IE Vorontsov, AD Fedorova, IS Yevshin, RN Sharipov, FA Kolpakov, ... BMC research notes 11, 1-3, 2018 | 29 | 2018 |
| Early B-cell factor 1 (EBF1) is critical for transcriptional control of SLAMF1 gene in human B cells AM Schwartz, LV Putlyaeva, M Covich, AV Klepikova, KA Akulich, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (10 …, 2016 | 26 | 2016 |
| Negative selection maintains transcription factor binding motifs in human cancer IE Vorontsov, G Khimulya, EN Lukianova, DD Nikolaeva, IA Eliseeva, ... BMC genomics 17, 263-276, 2016 | 20 | 2016 |
| ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs A Boytsov, S Abramov, AZ Aiusheeva, AM Kasianova, E Baulin, ... Nucleic Acids Research 50 (W1), W51-W56, 2022 | 17 | 2022 |
| In silico motif analysis suggests an interplay of transcriptional and translational control in mTOR response I Eliseeva, I Vorontsov, K Babeyev, S Buyanova, M Sysoeva, ... Translation 1 (2), 18-24, 2013 | 15 | 2013 |
Ivan KulakovskiyInstitute of Protein Research RASVerified email at vigg.ru
