| CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ... Public Library of Science 8 (10), e1002708, 2012 | 1160 | 2012 |
| MedusaScore: an accurate force field-based scoring function for virtual drug screening S Yin, L Biedermannova, J Vondrasek, NV Dokholyan Journal of chemical information and modeling 48 (8), 1656-1662, 2008 | 219 | 2008 |
| Unexpectedly strong energy stabilization inside the hydrophobic core of small protein rubredoxin mediated by aromatic residues: correlated ab initio quantum chemical calculations Vondrášek, Bendova, Klusák, Hobza Journal of the americhan chemical society 126, 10142, 2005 | 187 | 2005 |
| Remote chiral induction in the organocatalytic hydrosilylation of aromatic ketones and ketimines AV Malkov, A Liddon, P Ramirez-Lopez, L Bendova, D Haigh, P Kocovsky ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 45, 1432, 2006 | 176 | 2006 |
| On the Mechanism of Asymmetric Allylation of Aldehydes with Allyltrichlorosilanes Catalyzed by QUINOX, a Chiral Isoquinoline N-Oxide AV Malkov, P Ramírez-López, L Biedermannová, L Rulíšek, L Dufkova, ... Journal of the American Chemical Society 130 (15), 5341-5348, 2008 | 148 | 2008 |
| Software tools for identification, visualization and analysis of protein tunnels and channels J Brezovsky, E Chovancova, A Gora, A Pavelka, L Biedermannova, ... Biotechnology advances 31 (1), 38-49, 2013 | 115 | 2013 |
| Another role of proline: stabilization interactions in proteins and protein complexes concerning proline and tryptophane L Biedermannova, KE Riley, K Berka, P Hobza, J Vondrasek Physical Chemistry Chemical Physics 10 (42), 6350-6359, 2008 | 100* | 2008 |
| A single mutation in a tunnel to the active site changes the mechanism and kinetics of product release in haloalkane dehalogenase LinB L Biedermannová, Z Prokop, A Gora, E Chovancová, M Kovács, ... Journal of Biological Chemistry 287 (34), 29062-29074, 2012 | 88 | 2012 |
| Hydration of proteins and nucleic acids: advances in experiment and theory. A review L Biedermannová, B Schneider Biochimica et Biophysica Acta (BBA)-General Subjects 1860 (9), 1821-1835, 2016 | 61 | 2016 |
| Identifying key residues in proteins using inter-residue interaction energy matrix. L Bendova-Biedermannova, P Hobza, J Vondrasek Proteins: Structure, Function and Bioinformatics 72, 402, 2008 | 51 | 2008 |
| Model of Peptide Bond-Aromatic Ring Interaction: Correlated Ab Initio Quantum Chemical Study L Bendova, P Jurecka, P Hobza, J Vondrasek Journal of Physical Chemistry B 111, 9975, 2007 | 44 | 2007 |
| Mechanistic Dichotomy in the Asymmetric Allylation of Aldehydes with Allyltrichlorosilanes Catalyzed by Chiral Pyridine N‐Oxides AV Malkov, S Stončius, M Bell, F Castelluzzo, P Ramírez‐López, ... Chemistry–A European Journal 19 (28), 9167-9185, 2013 | 41 | 2013 |
| Novel high‐affinity binders of human interferon gamma derived from albumin‐binding domain of protein G JN Ahmad, J Li, L Biedermannová, M Kuchař, H Šípová, A Semerádtová, ... Proteins: Structure, Function, and Bioinformatics 80 (3), 774-789, 2012 | 41 | 2012 |
| Structure of the ordered hydration of amino acids in proteins: analysis of crystal structures L Biedermannová, B Schneider Acta Crystallographica Section D: Biological Crystallography 71 (11), 2192-2202, 2015 | 31 | 2015 |
| Structural alphabets for conformational analysis of nucleic acids available at dnatco. datmos. org J Černý, P Božíková, M Malý, M Tykač, L Biedermannová, B Schneider Acta Crystallographica Section D: Structural Biology 76 (9), 805-813, 2020 | 18 | 2020 |
| Rutinosidase from Aspergillus niger: crystal structure and insight into the enzymatic activity P Pachl, J Kapešová, J Brynda, L Biedermannová, H Pelantová, ... The FEBS Journal 287 (15), 3315-3327, 2020 | 17 | 2020 |
| Increasing Affinity of Interferon-Receptor 1 to Interferon-by Computer-Aided Design P Mikulecký, J Černý, L Biedermannová, H Petroková, M Kuchař, ... BioMed research international 2013, 2013 | 14* | 2013 |
| WatAA: Atlas of Protein Hydration. Exploring synergies between data mining and ab initio calculations J Černý, B Schneider, L Biedermannová Physical Chemistry Chemical Physics 19 (26), 17094-17102, 2017 | 13 | 2017 |
| Protein Binder (ProBi) as a new class of structurally robust non-antibody protein scaffold for directed evolution PN Pham, M Huličiak, L Biedermannová, J Černý, T Charnavets, ... Viruses 13 (2), 190, 2021 | 8 | 2021 |
| Redesigning protein cavities as a strategy for increasing affinity in protein-protein interaction: Interferon-γ receptor 1 as a model J Černý, L Biedermannová, P Mikulecký, J Zahradník, T Charnavets, ... BioMed Research International 2015, 2015 | 7 | 2015 |
jiri vondrasekInstitute of Organic Chemistry and Biochemistry, Head of BioinformaticsVerified email at uochb.cas.cz
