| Clinical concept extraction: a methodology review S Fu, D Chen, H He, S Liu, S Moon, KJ Peterson, F Shen, L Wang, ... Journal of biomedical informatics 109, 103526, 2020 | 135 | 2020 |
| Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation A Wen, S Fu, S Moon, M El Wazir, A Rosenbaum, VC Kaggal, S Liu, ... NPJ digital medicine 2 (1), 130, 2019 | 85 | 2019 |
| Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries N Hong, A Wen, DJ Stone, S Tsuji, PR Kingsbury, LV Rasmussen, ... Journal of biomedical informatics 99, 103310, 2019 | 62 | 2019 |
| Integrating structured and unstructured EHR data using an FHIR-based type system: a case study with medication data N Hong, A Wen, F Shen, S Sohn, S Liu, H Liu, G Jiang AMIA Summits on Translational Science Proceedings 2018, 74, 2018 | 53 | 2018 |
| Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data N Hong, A Wen, F Shen, S Sohn, C Wang, H Liu, G Jiang JAMIA open 2 (4), 570-579, 2019 | 47 | 2019 |
| HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology F Shen, S Peng, Y Fan, A Wen, S Liu, Y Wang, L Wang, H Liu Journal of biomedical informatics 96, 103246, 2019 | 35 | 2019 |
| Developing an FHIR-based computational pipeline for automatic population of case report forms for colorectal cancer clinical trials using electronic health records N Zong, A Wen, DJ Stone, DK Sharma, C Wang, Y Yu, H Liu, Q Shi, ... JCO Clinical Cancer Informatics 4, 201-209, 2020 | 33 | 2020 |
| Utilization of electronic medical records and biomedical literature to support the diagnosis of rare diseases using data fusion and collaborative filtering approaches F Shen, S Liu, Y Wang, A Wen, L Wang, H Liu JMIR medical informatics 6 (4), e11301, 2018 | 31 | 2018 |
| Detecting lifestyle risk factors for chronic kidney disease with comorbidities: association rule mining analysis of web-based survey data S Peng, F Shen, A Wen, L Wang, Y Fan, X Liu, H Liu Journal of medical Internet research 21 (12), e14204, 2019 | 26 | 2019 |
| Ascertainment of delirium status using natural language processing from electronic health records S Fu, GS Lopes, SR Pagali, B Thorsteinsdottir, NK LeBrasseur, A Wen, ... The Journals of Gerontology: Series A 77 (3), 524-530, 2022 | 24 | 2022 |
| Adapting and evaluating a deep learning language model for clinical why-question answering A Wen, MY Elwazir, S Moon, J Fan JAMIA open 3 (1), 16-20, 2020 | 24 | 2020 |
| Drug–target prediction utilizing heterogeneous bio-linked network embeddings N Zong, RSN Wong, Y Yu, A Wen, M Huang, N Li Briefings in bioinformatics 22 (1), 568-580, 2021 | 22 | 2021 |
| Assessment of electronic health record for cancer research and patient care through a scoping review of cancer natural language processing L Wang, S Fu, A Wen, X Ruan, H He, S Liu, S Moon, M Mai, IB Riaz, ... JCO Clinical Cancer Informatics 6, e2200006, 2022 | 21 | 2022 |
| Computational drug repurposing based on electronic health records: a scoping review N Zong, A Wen, S Moon, S Fu, L Wang, Y Zhao, Y Yu, M Huang, Y Wang, ... NPJ digital medicine 5 (1), 77, 2022 | 20 | 2022 |
| ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model Y Yu, KJ Ruddy, N Hong, S Tsuji, A Wen, ND Shah, G Jiang Journal of biomedical informatics 91, 103119, 2019 | 20 | 2019 |
| Standardizing heterogeneous annotation corpora using HL7 FHIR for facilitating their reuse and integration in clinical NLP N Hong, A Wen, MR Mojarad, S Sohn, H Liu, G Jiang AMIA Annual Symposium Proceedings 2018, 574, 2018 | 19 | 2018 |
| Implementation of a cohort retrieval system for clinical data repositories using the observational medical outcomes partnership common data model: proof-of-concept system … S Liu, Y Wang, A Wen, L Wang, N Hong, F Shen, S Bedrick, W Hersh, ... JMIR medical informatics 8 (10), e17376, 2020 | 18 | 2020 |
| Patient portal messaging for asynchronous virtual care during the COVID-19 pandemic: retrospective analysis M Huang, A Khurana, G Mastorakos, A Wen, H He, L Wang, S Liu, ... JMIR Human Factors 9 (2), e35187, 2022 | 17* | 2022 |
| Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration Y Yu, N Zong, A Wen, S Liu, DJ Stone, D Knaack, AM Chamberlain, ... Journal of Biomedical Informatics 127, 104002, 2022 | 16 | 2022 |
| An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses A Wen, L Wang, H He, S Liu, S Fu, S Sohn, JA Kugel, VC Kaggal, ... Journal of biomedical informatics 113, 103660, 2021 | 16 | 2021 |
