Anthony Gitter
Anthony Gitter
Associate Professor, University of Wisconsin-Madison; Morgridge Institute for Research
Verified email at - Homepage
Cited by
Cited by
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of The Royal Society Interface 15 (141), 20170387, 2018
Studying and modelling dynamic biological processes using time-series gene expression data
Z Bar-Joseph, A Gitter, I Simon
Nature Reviews Genetics 13 (8), 552-564, 2012
Network-based interpretation of diverse high-throughput datasets through the Omics Integrator software package
N Tuncbag, SJC Gosline, A Kedaigle, AR Soltis, A Gitter, E Fraenkel
PLoS computational biology 12 (4), e1004879, 2016
DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data
M Schulz, W Devanny, A Gitter, S Zhong, J Ernst, Z Bar-Joseph
BMC Systems Biology 6 (1), 104, 2012
Discovering pathways by orienting edges in protein interaction networks
A Gitter, J Klein-Seetharaman, A Gupta, Z Bar-Joseph
Nucleic acids research 39 (4), e22-e22, 2010
Loss-Balanced Task Weighting to Reduce Negative Transfer in Multi-Task Learning
S Liu, Y Liang, A Gitter
Proceedings of the Thirty-Third AAAI Conference on Artificial Intelligence …, 2019
Neural networks to learn protein sequence–function relationships from deep mutational scanning data
S Gelman, SA Fahlberg, P Heinzelman, PA Romero, A Gitter
Proceedings of the National Academy of Sciences 118 (48), e2104878118, 2021
Backup in gene regulatory networks explains differences between binding and knockout results
A Gitter, Z Siegfried, M Klutstein, O Fornes, B Oliva, I Simon, Z Bar‐Joseph
Molecular Systems Biology 5 (1), 276, 2009
Network inference with Granger causality ensembles on single-cell transcriptomics
A Deshpande, LF Chu, R Stewart, A Gitter
Cell Reports 38 (6), 110333, 2022
Learning Drug Functions from Chemical Structures with Convolutional Neural Networks and Random Forests
JG Meyer, S Liu, IJ Miller, JJ Coon, A Gitter
Journal of Chemical Information and Modeling 59 (10), 4438-4449, 2019
Linking the signaling cascades and dynamic regulatory networks controlling stress responses
A Gitter, M Carmi, N Barkai, Z Bar-Joseph
Genome Research 23 (2), 365-376, 2013
Practical model selection for prospective virtual screening
S Liu, M Alnammi, SS Ericksen, AF Voter, GE Ananiev, JL Keck, ...
Journal of chemical information and modeling 59 (1), 282-293, 2018
Open collaborative writing with Manubot
DS Himmelstein, V Rubinetti, DR Slochower, D Hu, VS Malladi, ...
PLOS Computational Biology 15 (6), e1007128, 2019
Integrated systems biology analysis of KSHV latent infection reveals viral induction and reliance on peroxisome mediated lipid metabolism
ZE Sychev, A Hu, TA DiMaio, A Gitter, ND Camp, WS Noble, ...
PLoS pathogens 13 (3), e1006256, 2017
A Network-based Approach for Predicting Missing Pathway Interactions
S Navlakha, A Gitter, Z Bar-Joseph
PLoS Computational Biology 8 (8), e1002640, 2012
Identifying proteins controlling key disease signaling pathways
A Gitter, Z Bar-Joseph
Bioinformatics 29 (13), i227-i236, 2013
Pathogenesis, symptomatology, and transmission of SARS-CoV-2 through analysis of viral genomics and structure
HM Rando, AL MacLean, AJ Lee, R Lordan, S Ray, V Bansal, AN Skelly, ...
mSystems 6 (5), e00095-21, 2021
A text-guided protein design framework
S Liu, Y Li, Z Li, A Gitter, Y Zhu, J Lu, Z Xu, W Nie, A Ramanathan, C Xiao, ...
arXiv preprint arXiv:2302.04611, 2023
Computationally efficient measure of topological redundancy of biological and social networks
R Albert, B DasGupta, R Hegde, GS Sivanathan, A Gitter, G Gürsoy, ...
Physical Review E 84 (3), 036117, 2011
Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data
AS Köksal, K Beck, DR Cronin, A McKenna, ND Camp, S Srivastava, ...
Cell Reports 24 (13), 3607-3618, 2018
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