M. Oguzhan Külekci

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Simone FaroAssociate Professor of Computer Science, University of CataniaVerified email at dmi.unict.it
Bojian XuProfessor of Computer Science, Eastern Washington UniversityVerified email at ewu.edu
Jeffrey S. VitterDistinguished Professor Emeritus of Computer & Information Science and Chancellor of the Univ. ofVerified email at OleMiss.edu
Atalay Mert İleriPostdoctoral Fellow, Kansas State UniversityVerified email at k-state.edu
Sharma V. ThankachanNorth Carolina State UniversityVerified email at ncsu.edu
Domenico CantoneProfessor of Computer Science, University of CataniaVerified email at dmi.unict.it
S. Cenk SahinalpSenior Investigator, Cancer Data Science Lab, National Cancer Institute, NIHVerified email at nih.gov
Jorma TarhioProfessor Emeritus, Aalto UniversityVerified email at aalto.fi
Tamanna ChhabraProfessorVerified email at sheridancollege.ca
Paniz AbedinFlorida Polytechnic UniversityVerified email at floridapoly.edu
Kemal OflazerCarnegie Mellon UniversityVerified email at andrew.cmu.edu
Sahar HooshmandCalifornia State University Dominguez HillsVerified email at csudh.edu
David WoodruffProfessor of Computer Science, Carnegie Mellon UniversityVerified email at cs.cmu.edu
Nikolai KarpovGenomic Applications Bioinformatician, Oxford Nanopore TechnologiesVerified email at nanoporetech.com
Can KockanComputational Scientist, Broad InstituteVerified email at broadinstitute.org
Natnatee DokmaiPostdoctoral Associate, Yale School of MedicineVerified email at yale.edu
Mahmut Samil SagirogluCTO, ErlabVerified email at erlab.com.tr
Ali FotouhiVerified email at usherbrooke.ca
Wing-Kai Hon (韓永楷)Professor of Computer Science, National Tsing Hua University, TaiwanVerified email at cs.nthu.edu.tw
Rahul ShahProfessor of Computer Science, Louisiana State UniversityVerified email at csc.lsu.edu

M. Oguzhan Külekci

Dept. of Computer Science, Indiana University Bloomington and Istanbul Technical University

Verified email at acm.org - Homepage

algorithms pattern matching data compression bioinformatics security & privacy


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Sketching algorithms for genomic data analysis and querying in a secure enclave C Kockan, K Zhu, N Dokmai, N Karpov, MO Kulekci, DP Woodruff, ... Nature methods 17 (3), 295-301, 2020	67	2020
Filter Based Fast Matching of Long Patterns by Using SIMD Instructions. MO Külekci Stringology, 118-128, 2009	43	2009
Fast packed string matching for short patterns S Faro, MO Külekci 2013 Proceedings of the Fifteenth Workshop on Algorithm Engineering and …, 2013	40	2013
Efficient maximal repeat finding using the burrows-wheeler transform and wavelet tree MO Kulekci, JS Vitter, B Xu IEEE/ACM Transactions on Computational Biology and Bioinformatics 9 (2), 421-429, 2011	35	2011
Fast multiple string matching using streaming SIMD extensions technology S Faro, MO Külekci International symposium on string processing and information retrieval, 217-228, 2012	33	2012
Efficient algorithms for the order preserving pattern matching problem S Faro, MO Külekci Algorithmic Aspects in Information and Management: 11th International …, 2016	31	2016
Alternative Algorithms for Order-Preserving Matching. T Chhabra, MO Külekci, J Tarhio Stringology, 36-46, 2015	28	2015
Fast and flexible packed string matching S Faro, MO Külekci Journal of Discrete Algorithms 28, 61-72, 2014	25	2014
Enhanced variable-length codes: Improved compression with efficient random access MO Külekci 2014 Data Compression Conference, 362-371, 2014	25	2014
A method to overcome computer word size limitation in bit-parallel pattern matching MO Külekci International Symposium on Algorithms and Computation, 496-506, 2008	25	2008
Shortest Unique Substring Query Revisited BX Atalay Mert İleri, M. Oğuzhan Külekci Combinatorial Pattern Matching, Lecture Notes in Computer Science 8486, 172-181, 2014	24*	2014
An Efficient Skip-Search Approach to the Order-Preserving Pattern Matching Problem. D Cantone, S Faro, MO Külekci Stringology, 22-35, 2015	23	2015
Engineering order‐preserving pattern matching with SIMD parallelism T Chhabra, S Faro, MO Külekci, J Tarhio Software: Practice and Experience 47 (5), 731-739, 2017	20	2017
Tara: An algorithm for fast searching of multiple patterns on text files MO Kulekci 2007 22nd international symposium on computer and information sciences, 1-6, 2007	18	2007
A simple yet time-optimal and linear-space algorithm for shortest unique substring queries AM Ileri, MO Külekci, B Xu Theoretical Computer Science 562, 621-633, 2015	17	2015
BLIM: A new bit-parallel pattern matching algorithm overcoming computer word size limitation MO Külekci Mathematics in Computer Science 3 (4), 407-420, 2010	15	2010
On scrambling the Burrows–Wheeler transform to provide privacy in lossless compression MO Külekci Computers & Security 31 (1), 26-32, 2012	14	2012
Turkish word segmentation using morphological analyzer MO Külekcý, M Özkan Seventh European Conference on Speech Communication and Technology, 2001	13	2001
An infrastructure for Turkish prosody generation in text-to-speech synthesis MO Külekçi, K Oflazer	11	2006
Non-overlapping indexing-cache obliviously S Hooshmand, P Abedin, MO Külekci, SV Thankachan 29th Annual Symposium on Combinatorial Pattern Matching (CPM 2018), 2018	9	2018

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