| Functional organization of the human 4D Nucleome H Chen, J Chen, LA Muir, S Ronquist, W Meixner, M Ljungman, T Ried, ... Proceedings of the National Academy of Sciences 112 (26), 8002-8007, 2015 | 122 | 2015 |
| Algorithm for cellular reprogramming S Ronquist, G Patterson, LA Muir, S Lindsly, H Chen, M Brown, MS Wicha, ... Proceedings of the National Academy of Sciences 114 (45), 11832-11837, 2017 | 49 | 2017 |
| Biomaterial Scaffolds Recruit an Aggressive Population of Metastatic Tumor Cells In Vivo GG Bushnell, TP Hardas, RM Hartfield, Y Zhang, RS Oakes, S Ronquist, ... Cancer research 79 (8), 2042-2053, 2019 | 33 | 2019 |
| Human CD206+ macrophages associate with diabetes and adipose tissue lymphoid clusters LA Muir, KW Cho, LM Geletka, NA Baker, CG Flesher, AP Ehlers, ... JCI insight 7 (3), 2022 | 30 | 2022 |
| Single chromosome aneuploidy induces genome-wide perturbation of nuclear organization and gene expression R Braun, S Ronquist, D Wangsa, H Chen, L Anthuber, T Gemoll, ... Neoplasia 21 (4), 401-412, 2019 | 30 | 2019 |
| Genome architecture mediates transcriptional control of human myogenic reprogramming S Liu, H Chen, S Ronquist, L Seaman, N Ceglia, W Meixner, PY Chen, ... Iscience 6, 232-246, 2018 | 21 | 2018 |
| 4DNvestigator: time series genomic data analysis toolbox S Lindsly, C Chen, S Liu, S Ronquist, S Dilworth, M Perlman, I Rajapakse Nucleus 12 (1), 58-64, 2021 | 16 | 2021 |
| Functional organization of the maternal and paternal human 4D nucleome S Lindsly, W Jia, H Chen, S Liu, S Ronquist, C Chen, X Wen, C Stansbury, ... IScience 24 (12), 2021 | 12 | 2021 |
| Chromosome conformation of human fibroblasts grown in 3-dimensional spheroids H Chen, N Comment, J Chen, S Ronquist, A Hero, T Ried, I Rajapakse Nucleus 6 (1), 55-65, 2015 | 10 | 2015 |
| Genome architecture leads a bifurcation in cell identity S Liu, H Chen, S Ronquist, L Seaman, N Ceglia, LA Muir, W Meixner, ... bioRxiv, 151555, 2017 | 7 | 2017 |
| TCF7L2 silencing results in altered gene expression patterns accompanied by local genomic reorganization MA Brown, GA Dotson, S Ronquist, G Emons, I Rajapakse, T Ried Neoplasia 23 (2), 257-269, 2021 | 6 | 2021 |
| Insight into dynamic genome imaging: Canonical framework identification and high-throughput analysis S Ronquist, W Meixner, I Rajapakse, J Snyder Methods 123, 119-127, 2017 | 6 | 2017 |
| Genome architecture leads a bifurcation in cell identity. bioRxiv S Liu, H Chen, S Ronquist, L Seaman, N Ceglia, W Meixner, LA Muir, ... | 4 | 2017 |
| A unified approach of detecting phase transition in time-varying complex networks MR Znaidi, J Sia, S Ronquist, I Rajapakse, E Jonckheere, P Bogdan Scientific Reports 13 (1), 17948, 2023 | 3 | 2023 |
| Functional organization of the maternal and paternal human 4d nucleome S Lindsly, W Jia, H Chen, S Liu, S Ronquist, C Chen, X Wen, C Stansbury, ... | 3 | 2020 |
| 4dnvestigator: a toolbox for the analysis of time series hi-c and rna-seq data S Ronquist, S Liu, M Perlman, I Rajapakse Nucleic Acids Research, 2019 | 3 | 2019 |
| Rearrangement of T Cell genome architecture regulates GVHD Y Sun, GA Dotson, LA Muir, S Ronquist, K Oravecz-Wilson, D Peltier, ... Iscience 25 (9), 2022 | 1 | 2022 |
| Functional organization of the maternal and paternal human 4D Nucleome. C Stansbury, G Dotson, C Ryan, A Rehemtulla, G Omenn, M Wicha, S Li, ... iScience 24 (12), 2021 | 1 | 2021 |
| Genome architecture and transcription data reveal allelic bias during the cell cycle S Lindsly, W Jia, H Chen, S Liu, S Ronquist, C Chen, X Wen, G Omenn, ... bioRxiv, 2020.03. 15.992164, 2020 | 1 | 2020 |
| Control approach to cell reprogramming I Rajapakse, G Patterson, S Ronquist US Patent 10,672,501, 2020 | | 2020 |
