| ETE 3: reconstruction, analysis, and visualization of phylogenomic data J Huerta-Cepas, F Serra, P Bork Molecular biology and evolution 33 (6), 1635-1638, 2016 | 1610 | 2016 |
| Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation F Le Dily, D Bau, A Pohl, GP Vicent, F Serra, D Soronellas, G Castellano, ... Genes & development 28 (19), 2151-2162, 2014 | 331 | 2014 |
| Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming R Stadhouders, E Vidal, F Serra, B Di Stefano, F Le Dily, J Quilez, ... Nature Genetics, 1, 2018 | 317 | 2018 |
| Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors F Serra, D Baù, M Goodstadt, D Castillo, GJ Filion, MA Marti-Renom PLoS computational biology 13 (7), e1005665, 2017 | 291* | 2017 |
| Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing R Sánchez, F Serra, J Tárraga, I Medina, J Carbonell, L Pulido, ... Nucleic Acids Research 39 (suppl 2), W470, 2011 | 225 | 2011 |
| Role of tomato BRANCHED1‐like genes in the control of shoot branching M Martín‐Trillo, EG Grandío, F Serra, F Marcel, ML Rodríguez‐Buey, ... The Plant Journal, 2011 | 185 | 2011 |
| The reference epigenome and regulatory chromatin landscape of chronic lymphocytic leukemia R Beekman, V Chapaprieta, N Russiñol, R Vilarrasa-Blasi, ... Nature medicine 24 (6), 868-880, 2018 | 177 | 2018 |
| 4D genome rewiring during oncogene-induced and replicative senescence S Sati, B Bonev, Q Szabo, D Jost, P Bensadoun, F Serra, V Loubiere, ... Molecular cell 78 (3), 522-538. e9, 2020 | 110 | 2020 |
| Restraint-based three-dimensional modeling of genomes and genomic domains F Serra, M Di Stefano, YG Spill, Y Cuartero, M Goodstadt, D Baù, ... FEBS letters 589 (20), 2987-2995, 2015 | 98 | 2015 |
| Assessing the limits of restraint-based 3D modeling of genomes and genomic domains M Trussart, F Serra, D Bau, I Junier, L Serrano, MA Marti-Renom Nucleic acids research 43 (7), 3465-3477, 2015 | 70 | 2015 |
| Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs M Di Stefano, R Stadhouders, I Farabella, D Castillo, F Serra, T Graf, ... Nature communications 11 (1), 2564, 2020 | 45 | 2020 |
| Evolution of the biosynthesis of di‐myo‐inositol phosphate, a marker of adaptation to hot marine environments LG Gonçalves, N Borges, F Serra, PL Fernandes, H Dopazo, H Santos Environmental Microbiology 14 (3), 691-701, 2012 | 34 | 2012 |
| Evolutionary genomics of genes involved in olfactory behavior in the Drosophila melanogaster species group N Lavagnino, F Serra, L Arbiza, H Dopazo, E Hasson Evolutionary bioinformatics online 8, 89, 2012 | 31 | 2012 |
| Recent human evolution has shaped geographical differences in susceptibility to disease UM Marigorta, O Lao, F Casals, F Calafell, C Morcillo-Suárez, R Faria, ... BMC genomics 12 (1), 1-14, 2011 | 31 | 2011 |
| Sexual selection halts the relaxation of protamine 2 among rodents L Lüke, A Vicens, F Serra, JJ Luque-Larena, H Dopazo, ERS Roldan, ... PLoS one 6 (12), e29247, 2011 | 28 | 2011 |
| 3D modeling of chromatin structure: is there a way to integrate and reconcile single cell and population experimental data? F Le Dily, F Serra, MA Marti‐Renom Wiley Interdisciplinary Reviews: Computational Molecular Science 7 (5), e1308, 2017 | 23 | 2017 |
| Selective constraints on protamine 2 in primates and rodents L Lüke, M Tourmente, H Dopazo, F Serra, ERS Roldan BMC Evolutionary Biology 16, 1-11, 2016 | 19 | 2016 |
| Neutral theory predicts the relative abundance and diversity of genetic elements in a broad array of eukaryotic genomes F Serra, V Becher, H Dopazo PLoS One 8 (6), e63915, 2013 | 19 | 2013 |
| STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells L Richart, E Lapi, V Pancaldi, M Cuenca-Ardura, ECS Pau, ... Nucleic Acids Research 49 (19), 11005-11021, 2021 | 17 | 2021 |
| Positive Selection in Nucleoporins Challenges Constraints on Early Expressed Genes in Drosophila Development J Mensch, F Serra, NJ Lavagnino, H Dopazo, E Hasson Genome biology and evolution 5 (11), 2231-2241, 2013 | 15 | 2013 |
Marc A. Marti-RenomICREA Research Professor @ CNAG-CRGVerified email at cnag.crg.eu
