Simón Poblete
Simón Poblete
Assistant Professor. Universidad San Sebastián, Fundación Ciencia y Vida
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Cited by
Cited by
RNA structural dynamics as captured by molecular simulations: a comprehensive overview
J Sponer, G Bussi, M Krepl, P Banáš, S Bottaro, RA Cunha, A Gil-Ley, ...
Chemical reviews 118 (8), 4177-4338, 2018
Adaptive resolution molecular dynamics simulation through coupling to an internal particle reservoir
S Fritsch, S Poblete, C Junghans, G Ciccotti, K Kremer
arXiv preprint arXiv:1112.3151, 2011
Coupling different levels of resolution in molecular simulations
S Poblete, M Praprotnik, K Kremer, L Delle Site
The Journal of chemical physics 132 (11), 2010
Hydrodynamics of discrete-particle models of spherical colloids: A multiparticle collision dynamics simulation study
S Poblete, A Wysocki, G Gompper, RG Winkler
Physical Review E 90 (3), 033314, 2014
Statistical physics problems in adaptive resolution computer simulations of complex fluids
M Praprotnik, S Poblete, K Kremer
Journal of Statistical Physics 145, 946-966, 2011
Inter-dye distance distributions studied by a combination of single-molecule FRET-filtered lifetime measurements and a weighted accessible volume (wAV) algorithm
H Höfig, M Gabba, S Poblete, D Kempe, J Fitter
Molecules 19 (12), 19269-19291, 2014
A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs
S Poblete, S Bottaro, G Bussi
Nucleic acids research 46 (4), 1674-1683, 2018
Comment on “Adaptive Multiscale Molecular<? format?> Dynamics of Macromolecular Fluids”
M Praprotnik, S Poblete, L Delle Site, K Kremer
Physical review letters 107 (9), 099801, 2011
Conformational state distributions and catalytically relevant dynamics of a hinge-bending enzyme studied by single-molecule FRET and a coarse-grained simulation
M Gabba, S Poblete, T Rosenkranz, A Katranidis, D Kempe, T Züchner, ...
Biophysical journal 107 (8), 1913-1923, 2014
Structure and dynamics of a compact state of a multidomain protein, the mercuric ion reductase
L Hong, MA Sharp, S Poblete, R Biehl, M Zamponi, N Szekely, ...
Biophysical journal 107 (2), 393-400, 2014
A reference implementation of the adaptive resolution scheme in ESPResSo
C Junghans, S Poblete
Computer Physics Communications 181 (8), 1449-1454, 2010
Static and dynamic light scattering by red blood cells: A numerical study
J Mauer, M Peltomäki, S Poblete, G Gompper, DA Fedosov
PLoS One 12 (5), e0176799, 2017
Single-molecule FRET measurements in additive-enriched aqueous solutions
D Kempe, M Cerminara, S Poblete, A Schöne, M Gabba, J Fitter
Analytical chemistry 89 (1), 694-702, 2017
Structural 3d domain reconstruction of the rna genome from viruses with secondary structure models
S Poblete, HV Guzman
Viruses 13 (8), 1555, 2021
Effects and limitations of a nucleobase-driven backmapping procedure for nucleic acids using steered molecular dynamics
S Poblete, S Bottaro, G Bussi
Biochemical and biophysical research communications 498 (2), 352-358, 2018
Rna secondary structures regulate adsorption of fragments onto flat substrates
S Poblete, A Bozic, M Kanduc, R Podgornik, HV Guzman
ACS omega 6 (48), 32823-32831, 2021
Sampling globally and locally correct rna 3d structures using ernwin, spqr and experimental saxs data
BC Thiel, G Bussi, S Poblete, IL Hofacker
bioRxiv, 2022.07. 02.498583, 2022
The G\= oMartini approach: Revisiting the concept of contact maps and the modelling of protein complexes
LF Cofas-Vargas, RA Moreira, S Poblete, M Chwastyk, AB Poma
arXiv preprint arXiv:2311.08174, 2023
Characterization of the melting transition in two dimensions at vanishing external pressure using molecular dynamics simulations
D Asenjo, F Lund, S Poblete, R Soto, M Sotomayor
Physical Review B 83 (17), 174110, 2011
RNA multiscale simulations as an interplay of electrostatic, mechanical properties, and structures inside viruses
S Cruz-León, S Assenza, S Poblete, HV Guzman
Physical Virology: From the State-of-the-Art Research to the Future of …, 2023
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