DIANA-microT web server v5. 0: service integration into miRNA functional analysis workflows MD Paraskevopoulou, G Georgakilas, N Kostoulas, IS Vlachos, ... Nucleic acids research 41 (W1), W169-W173, 2013 | 1280 | 2013 |
DIANA-microT web server: elucidating microRNA functions through target prediction M Maragkakis, M Reczko, VA Simossis, P Alexiou, GL Papadopoulos, ... Nucleic acids research 37 (suppl_2), W273-W276, 2009 | 711 | 2009 |
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support T Vergoulis, IS Vlachos, P Alexiou, G Georgakilas, M Maragkakis, ... Nucleic acids research 40 (D1), D222-D229, 2012 | 657 | 2012 |
DIANA miRPath v. 2.0: investigating the combinatorial effect of microRNAs in pathways IS Vlachos, N Kostoulas, T Vergoulis, G Georgakilas, M Reczko, ... Nucleic acids research 40 (W1), W498-W504, 2012 | 619 | 2012 |
Functional microRNA targets in protein coding sequences M Reczko, M Maragkakis, P Alexiou, I Grosse, AG Hatzigeorgiou Bioinformatics 28 (6), 771-776, 2012 | 614 | 2012 |
The database of experimentally supported targets: a functional update of TarBase GL Papadopoulos, M Reczko, VA Simossis, P Sethupathy, ... Nucleic acids research 37 (suppl 1), D155-D158, 2009 | 498 | 2009 |
SNNS-Stuttgart Neural Network Simulator A Zell, N Mache, R Huebner, G Mamier, M Vogt, KU Herrmann, ... | 447 | 1993 |
Accurate microRNA target prediction correlates with protein repression levels M Maragkakis, P Alexiou, GL Papadopoulos, M Reczko, T Dalamagas, ... BMC bioinformatics 10 (1), 1, 2009 | 431 | 2009 |
Lost in translation: an assessment and perspective for computational microRNA target identification P Alexiou, M Maragkakis, GL Papadopoulos, M Reczko, ... Bioinformatics 25 (23), 3049-3055, 2009 | 423 | 2009 |
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs MD Paraskevopoulou, G Georgakilas, N Kostoulas, M Reczko, ... Nucleic acids research 41 (D1), D239-D245, 2013 | 367 | 2013 |
DIANA-mirPath: Integrating human and mouse microRNAs in pathways GL Papadopoulos, P Alexiou, M Maragkakis, M Reczko, ... Bioinformatics 25 (15), 1991-1993, 2009 | 337 | 2009 |
Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia C Camps, HK Saini, DR Mole, H Choudhry, M Reczko, ... Molecular cancer 13 (1), 1, 2014 | 189 | 2014 |
DOME: Recommendations for supervised machine learning validation in biology I Walsh, D Fishman, D Garcia-Gasulla, T Titma, G Pollastri, J Harrow, ... Nature Methods, 1-6, 2021 | 180 | 2021 |
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association M Maragkakis, T Vergoulis, P Alexiou, M Reczko, K Plomaritou, M Gousis, ... Nucleic acids research 39 (suppl 2), W145-W148, 2011 | 180 | 2011 |
The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species A Papanicolaou, MF Schetelig, P Arensburger, PW Atkinson, JB Benoit, ... Genome Biology 17 (1), 192, 2016 | 166 | 2016 |
Identification of microRNA-221/222 and microRNA-323-3p association with rheumatoid arthritis via predictions using the human tumour necrosis factor transgenic mouse model I Pandis, C Ospelt, N Karagianni, MC Denis, M Reczko, C Camps, ... Annals of the rheumatic diseases 71 (10), 1716-1723, 2012 | 129 | 2012 |
Bidirectional long short-term memory networks for predicting the subcellular localization of eukaryotic proteins T Thireou, M Reczko IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB) 4 …, 2007 | 125 | 2007 |
Discrete clusters of virus-encoded microRNAs are associated with complementary strands of the genome and the 7.2-kilobase stable intron in murine cytomegalovirus AH Buck, J Santoyo-Lopez, KA Robertson, DS Kumar, M Reczko, ... Journal of virology 81 (24), 13761-13770, 2007 | 102 | 2007 |
The DEF data base of sequence based protein fold class predictions. M Reczko, H Bohr Nucleic acids research 22 (17), 3616, 1994 | 88 | 1994 |
Prediction of novel microRNA genes in cancer-associated genomic regions—a combined computational and experimental approach A Oulas, A Boutla, K Gkirtzou, M Reczko, K Kalantidis, P Poirazi Nucleic acids research, gkp120, 2009 | 85 | 2009 |