Method of conditional moments (MCM) for the Chemical Master Equation: A unified framework for the method of moments and hybrid stochastic-deterministic models J Hasenauer, V Wolf, A Kazeroonian, FJ Theis Journal of mathematical biology 69, 687-735, 2014 | 140 | 2014 |
Inference for stochastic chemical kinetics using moment equations and system size expansion F Fröhlich, P Thomas, A Kazeroonian, FJ Theis, R Grima, J Hasenauer PLoS computational biology 12 (7), e1005030, 2016 | 86 | 2016 |
CERENA: ChEmical REaction Network Analyzer—a toolbox for the simulation and analysis of stochastic chemical kinetics A Kazeroonian, F Fröhlich, A Raue, FJ Theis, J Hasenauer PloS one 11 (1), e0146732, 2016 | 54 | 2016 |
Early emergence of T central memory precursors programs clonal dominance during chronic viral infection S Grassmann, L Mihatsch, J Mir, A Kazeroonian, R Rahimi, ... Nature immunology 21 (12), 1563-1573, 2020 | 51 | 2020 |
Heritable changes in division speed accompany the diversification of single T cell fate M Plambeck, A Kazeroonian, D Loeffler, L Kretschmer, C Salinno, ... Proceedings of the National Academy of Sciences 119 (9), e2116260119, 2022 | 19 | 2022 |
Modeling of stochastic biological processes with non-polynomial propensities using non-central conditional moment equation A Kazeroonian, FJ Theis, J Hasenauer IFAC Proceedings Volumes 47 (3), 1729-1735, 2014 | 15 | 2014 |
Parameter estimation for stochastic biochemical processes: A comparison of moment equation and fintie state projection A Kazeroonian, J Hasenauer, F Theis | 3 | 2013 |
A scalable moment-closure approximation for large-scale biochemical reaction networks A Kazeroonian, FJ Theis, J Hasenauer Bioinformatics 33 (14), i293-i300, 2017 | 2 | 2017 |
Heritable changes in division speed accompany the diversification of single T cell fate M Plambeck, A Kazeroonian, D Loeffler, T Schroeder, DH Busch, ... bioRxiv, 2021.07. 28.454102, 2021 | 1 | 2021 |
Studying the dynamics of stochastic biochemical processes using generalised moment closure approximations A Kazeroonian Technische Universität München, 2018 | | 2018 |
User Documentation for CERENA: CERENA: ChEmical REaction Network Analyzer-A Toolbox for the Simulation and Analysis of Stochastic Chemical Kinetics A Kazeroonian, F Fröhlich, A Raue, FJ Theis, J Hasenauer | | 2015 |
Fast Fourier Transform and Fast Multipole Methods for efficent N-particle simulation problems A Kazeroonian | | 2011 |
Population Approach Group Europe Population Approach Group Europe A Kazeroonian | | |
Supplement to Inference for stochastic chemical kinetics using moment equations and system size expansion F Fröhlich, P Thomas, A Kazeroonian, FJ Theis, R Grima, J Hasenauer | | |