| Sequence co-evolution gives 3D contacts and structures of protein complexes TA Hopf, CPI Schärfe, JP Rodrigues, AG Green, O Kohlbacher, C Sander, ... elife 3, e03430, 2014 | 541 | 2014 |
| The EVcouplings Python framework for coevolutionary sequence analysis TA Hopf, AG Green, B Schubert, S Mersmann, CPI Schärfe, JB Ingraham, ... Bioinformatics 35 (9), 1582-1584, 2019 | 230 | 2019 |
| Genomic epidemiology of gonococcal resistance to extended-spectrum cephalosporins, macrolides, and fluoroquinolones in the United States, 2000–2013 YH Grad, SR Harris, RD Kirkcaldy, AG Green, DS Marks, SD Bentley, ... The Journal of infectious diseases 214 (10), 1579-1587, 2016 | 220 | 2016 |
| Structure of the peptidoglycan polymerase RodA resolved by evolutionary coupling analysis M Sjodt, K Brock, G Dobihal, PDA Rohs, AG Green, TA Hopf, AJ Meeske, ... Nature 556 (7699), 118-121, 2018 | 135 | 2018 |
| Structural coordination of polymerization and crosslinking by a SEDS–bPBP peptidoglycan synthase complex M Sjodt, PDA Rohs, MSA Gilman, SC Erlandson, S Zheng, AG Green, ... Nature microbiology 5 (6), 813-820, 2020 | 111 | 2020 |
| Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences AG Green, H Elhabashy, KP Brock, R Maddamsetti, O Kohlbacher, ... Nature communications 12 (1), 1396, 2021 | 97 | 2021 |
| Core Genes Evolve Rapidly in the Long-term Evolution Experiment with Escherichia coli R Maddamsetti, PJ Hatcher, AG Green, BL Williams, DS Marks, RE Lenski Genome Biology and Evolution 9 (4), 1072, 2017 | 72 | 2017 |
| Antiparallel protocadherin homodimers use distinct affinity-and specificity-mediating regions in cadherin repeats 1-4 JM Nicoludis, BE Vogt, AG Green, CPI Schärfe, DS Marks, R Gaudet Elife 5, e18449, 2016 | 63 | 2016 |
| A rooted net of life D Williams, GP Fournier, P Lapierre, KS Swithers, AG Green, CP Andam, ... Biology direct 6, 1-20, 2011 | 54 | 2011 |
| Reconstructed Ancestral Myo-Inositol-3-Phosphate Synthases Indicate That Ancestors of the Thermococcales and Thermotoga Species Were More Thermophilic … NC Butzin, P Lapierre, AG Green, KS Swithers, JP Gogarten, KM Noll PLoS One 8 (12), e84300, 2013 | 40 | 2013 |
| A convolutional neural network highlights mutations relevant to antimicrobial resistance in Mycobacterium tuberculosis AG Green, CH Yoon, ML Chen, Y Ektefaie, M Fina, L Freschi, MI Gröschel, ... Nature communications 13 (1), 3817, 2022 | 39 | 2022 |
| Impact of a homing intein on recombination frequency and organismal fitness A Naor, N Altman-Price, SM Soucy, AG Green, Y Mitiagin, ... Proceedings of the National Academy of Sciences 113 (32), E4654-E4661, 2016 | 37 | 2016 |
| Co-evolution of interacting proteins through non-contacting and non-specific mutations D Ding, AG Green, B Wang, TLV Lite, EN Weinstein, DS Marks, MT Laub Nature ecology & evolution 6 (5), 590-603, 2022 | 36 | 2022 |
| Genome Sequence of the Mesophilic Thermotogales Bacterium Mesotoga prima MesG1.Ag.4.2 Reveals the Largest Thermotogales Genome To Date O Zhaxybayeva, KS Swithers, J Foght, AG Green, D Bruce, C Detter, ... Genome Biology and Evolution 4 (8), 812-820, 2012 | 34 | 2012 |
| Interaction specificity of clustered protocadherins inferred from sequence covariation and structural analysis JM Nicoludis, AG Green, S Walujkar, EJ May, M Sotomayor, DS Marks, ... Proceedings of the National Academy of Sciences 116 (36), 17825-17830, 2019 | 32 | 2019 |
| Dormant spores sense amino acids through the B subunits of their germination receptors L Artzi, A Alon, KP Brock, AG Green, A Tam, FH Ramírez-Guadiana, ... Nature Communications 12 (1), 6842, 2021 | 31 | 2021 |
| Structural coordination of polymerization and crosslinking by a SEDS-bPBP peptidoglycan synthase complex. Nat Microbiol 5: 813–820 M Sjodt, PDA Rohs, MSA Gilman, SC Erlandson, S Zheng, AG Green, ... | 18 | 2020 |
| Reassessment of the lineage fusion hypothesis for the origin of double membrane bacteria KS Swithers, GP Fournier, AG Green, JP Gogarten, P Lapierre Plos one 6 (8), e23774, 2011 | 9 | 2011 |
| Reconstruction of ancestral 16S rRNA reveals mutation bias in the evolution of optimal growth temperature in the Thermotogae phylum AG Green, KS Swithers, JF Gogarten, JP Gogarten Molecular biology and evolution 30 (11), 2463-2474, 2013 | 8 | 2013 |
| Analysis of Genome-Wide Mutational Dependence in Naturally Evolving Mycobacterium tuberculosis Populations AG Green, R Vargas Jr, MG Marin, L Freschi, J Xie, MR Farhat Molecular Biology and Evolution 40 (6), msad131, 2023 | 4* | 2023 |
