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Felix Teufel
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SignalP 6.0 predicts all five types of signal peptides using protein language models
F Teufel, JJ Almagro Armenteros, AR Johansen, MH Gíslason, SI Pihl, ...
Nature biotechnology 40 (7), 1023-1025, 2022
11212022
Impact of pulsed electric field (PEF) pretreatment on process performance of industrial French fries production
T Fauster, D Schlossnikl, F Rath, R Ostermeier, F Teufel, S Toepfl, ...
Journal of Food Engineering 235, 16-22, 2018
1212018
Combining mass spectrometry and machine learning to discover bioactive peptides
CT Madsen, JC Refsgaard, FG Teufel, SK Kjærulff, Z Wang, G Meng, ...
Nature communications 13 (1), 6235, 2022
152022
Deorphanizing peptides using structure prediction
F Teufel, JC Refsgaard, MA Kasimova, K Deibler, CT Madsen, C Stahlhut, ...
Journal of chemical information and modeling 63 (9), 2651-2655, 2023
112023
MembraneFold: Visualising transmembrane protein structure and topology
S Gutierrez, WG Tyczynski, W Boomsma, F Teufel, O Winther
bioRxiv, 2022.12. 06.518085, 2022
102022
GraphPart: homology partitioning for biological sequence analysis
F Teufel, MH Gíslason, JJ Almagro Armenteros, AR Johansen, O Winther, ...
NAR genomics and bioinformatics 5 (4), lqad088, 2023
82023
The dynamic landscape of peptide activity prediction
O Bárcenas, C Pintado-Grima, K Sidorczuk, F Teufel, H Nielsen, ...
Computational and Structural Biotechnology Journal 20, 6526-6533, 2022
82022
BEND: Benchmarking DNA Language Models on Biologically Meaningful Tasks
FI Marin, F Teufel, M Horlacher, D Madsen, D Pultz, O Winther, ...
The Twelfth International Conference on Learning Representations, 2023
32023
Predicting the subcellular location of prokaryotic proteins with DeepLocPro
J Moreno, H Nielsen, O Winther, F Teufel
bioRxiv, 2024.01. 04.574157, 2024
12024
DeepLoc 2.1: multi-label membrane protein type prediction using protein language models
MT Ødum, F Teufel, V Thumuluri, JJ Almagro Armenteros, AR Johansen, ...
Nucleic Acids Research, gkae237, 2024
2024
SecretoGen: towards prediction of signal peptides for efficient protein secretion
F Teufel, C Stahlhut, J Refsgaard, H Nielsen, O Winther, D Madsen
NeurIPS 2023 Generative AI and Biology (GenBio) Workshop, 2023
2023
DeepPeptide predicts cleaved peptides in proteins using conditional random fields
F Teufel, JC Refsgaard, CT Madsen, C Stahlhut, M Grønborg, O Winther, ...
Bioinformatics 39 (10), btad616, 2023
2023
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Articles 1–12