| Therapeutic efficacy of potent neutralizing HIV-1-specific monoclonal antibodies in SHIV-infected rhesus monkeys DH Barouch, JB Whitney, B Moldt, F Klein, TY Oliveira, J Liu, ... Nature 503 (7475), 224-228, 2013 | 819 | 2013 |
| BioNetGen 2.2: advances in rule-based modeling LA Harris, JS Hogg, JJ Tapia, JAP Sekar, S Gupta, I Korsunsky, A Arora, ... Bioinformatics 32 (21), 3366-3368, 2016 | 254 | 2016 |
| The immunoregulatory landscape of human tuberculosis granulomas EF McCaffrey, M Donato, L Keren, Z Chen, A Delmastro, MB Fitzpatrick, ... Nature immunology 23 (2), 318-329, 2022 | 186 | 2022 |
| The immunoregulatory landscape of human tuberculosis granulomas EF McCaffrey, M Donato, L Keren, Z Chen, A Delmastro, MB Fitzpatrick, ... Nature immunology 23 (2), 318-329, 2022 | 186 | 2022 |
| NF-κB dynamics discriminate between TNF doses in single cells Q Zhang, S Gupta, DL Schipper, GJ Kowalczyk, AE Mancini, JR Faeder, ... Cell systems 5 (6), 638-645. e5, 2017 | 81 | 2017 |
| Quantitative biology: theory, computational methods, and models B Munsky, WS Hlavacek, LS Tsimring MIT Press, 2018 | 40 | 2018 |
| Evaluation of parallel tempering to accelerate Bayesian parameter estimation in systems biology S Gupta, L Hainsworth, J Hogg, R Lee, J Faeder 2018 26th Euromicro International Conference on Parallel, Distributed and …, 2018 | 30 | 2018 |
| Parallel Tempering with Lasso for model reduction in systems biology S Gupta, REC Lee, JR Faeder PLoS computational biology 16 (3), e1007669, 2020 | 24 | 2020 |
| A robust host-response-based signature distinguishes bacterial and viral infections across diverse global populations AM Rao, SJ Popper, S Gupta, V Davong, K Vaidya, A Chanthongthip, ... Cell Reports Medicine 3 (12), 100842, 2022 | 22 | 2022 |
| A variable-gain stochastic pooling motif mediates information transfer from receptor assemblies into NF-κB JA Cruz, CS Mokashi, GJ Kowalczyk, Y Guo, Q Zhang, S Gupta, ... Science Advances 7 (30), eabi9410, 2021 | 17 | 2021 |
| A variable-gain stochastic pooling motif mediates information transfer from receptor assemblies into NF- B JA Cruz, CS Mokashi, GJ Kowalczyk, Y Guo, Q Zhang, S Gupta, ... | 17* | 2021 |
| Spatial Stochastic Modeling with MCell and CellBlender S Gupta, J Czech, R Kuczewski, TM Bartol, TJ Sejnowski, REC Lee, ... Quantitative Biology: Theory, Computational Methods, and Models, 485-511, 2018 | 14 | 2018 |
| Increasing reproducibility, robustness, and generalizability of biomarker selection from meta-analysis using Bayesian methodology L Kalesinskas, S Gupta, P Khatri PLOS Computational Biology 18 (6), e1010260, 2022 | 6 | 2022 |
| A Nine-Gene Blood-Based Signature Meets the World Health Organization Target Product Profiles for Diagnosis of Active Tuberculosis and Predicting Progression from Latent to … S Gupta, AM Rao, M Scott, V Crudu, TC Rodwell, D Catanzaro, ... C106. FIRE TB LIVES ON, A4924-A4924, 2022 | 2 | 2022 |
| Statistical and Mechanistic Approaches to Study Cell Signaling Dynamics S Gupta University of Pittsburgh, 2020 | | 2020 |
| Introduction to Rule-Based Modeling with BioNetGen K Aggarwal, S Gupta, JR Faeder | | |
| Dose-discrimination in single cells Q Zhang, S Gupta, D Schipper, G Kowalczyk, JR Faeder, REC Lee | | |
