| Joint analysis of heterogeneous single-cell RNA-seq dataset collections N Barkas, V Petukhov, D Nikolaeva, Y Lozinsky, S Demharter, ... Nature methods 16 (8), 695-698, 2019 | 238 | 2019 |
| Precise reconstruction of the TME using bulk RNA-seq and a machine learning algorithm trained on artificial transcriptomes A Zaitsev, M Chelushkin, D Dyikanov, I Cheremushkin, B Shpak, K Nomie, ... Cancer Cell 40 (8), 879-894. e16, 2022 | 56 | 2022 |
| Wiring together large single-cell RNA-seq sample collections N Barkas, V Petukhov, D Nikolaeva, Y Lozinsky, S Demharter, ... bioRxiv, 460246, 2018 | 20 | 2018 |
| Genome rearrangements and phylogeny reconstruction in Yersinia pestis OO Bochkareva, NO Dranenko, ES Ocheredko, GM Kanevsky, ... PeerJ 6, e4545, 2018 | 15 | 2018 |
| A multi-scale, multiomic atlas of human normal and follicular lymphoma lymph nodes AJ Radtke, E Postovalova, A Varlamova, A Bagaev, M Sorokina, ... BioRxiv, 2022.06. 03.494716, 2022 | 13 | 2022 |
| Multiregional single-cell proteogenomic analysis of ccRCC reveals cytokine drivers of intratumor spatial heterogeneity N Miheecheva, E Postovalova, Y Lyu, A Ramachandran, A Bagaev, ... Cell Reports 40 (7), 2022 | 8 | 2022 |
| Procrustes is a machine-learning approach that removes cross-platform batch effects from clinical RNA sequencing data N Kotlov, K Shaposhnikov, C Tazearslan, M Chasse, A Baisangurov, ... Communications Biology 7 (1), 1-14, 2024 | 1 | 2024 |
| Techniques for nucleic acid data quality control E Nuzhdina, A Bagaev, M Chelushkin, Y Lozinsky, N Miheecheva, ... US Patent App. 16/920,641, 2021 | 1 | 2021 |
| Integrated single-cell spatial multi-omics of intratumor heterogeneity in renal cell carcinoma. JJ Hsieh, N Miheecheva, A Ramachandran, Y Lyu, I Galkin, V Svekolkin, ... Journal of Clinical Oncology 38 (15_suppl), e17106-e17106, 2020 | 1 | 2020 |
| Multi-omic profiling of follicular lymphoma reveals changes in tissue architecture and enhanced stromal remodeling in high-risk patients AJ Radtke, E Postovalova, A Varlamova, A Bagaev, M Sorokina, ... Cancer Cell, 2024 | | 2024 |
| Combinatory technologies for single sample gene expression projection onto a cohort sequenced with a different technology for personalized clinical decision-making N Kotlov, K Shaposhnikov, C Tazearslan, I Cheremushkin, M Chasse, ... Cancer Research 82 (12_Supplement), 1216-1216, 2022 | | 2022 |
| Systems and methods for sample preparation, sample sequencing, and sequencing data bias correction and quality control E Nuzhdina, A Bagaev, M Chelushkin, Y Lozinsky, N Miheecheva, ... US Patent App. 17/565,659, 2022 | | 2022 |
| Analytical and clinical validation of the BostonGene tumor portrait assay. K Nuzhdina, Y Lozinsky, S Podsvirova, A Baisangurov, K Morgan, ... Journal of Clinical Oncology 39 (15_suppl), e15085-e15085, 2021 | | 2021 |
| Techniques for bias correction in sequence data E Nuzhdina, A Bagaev, M Chelushkin, Y Lozinsky, N Miheecheva, ... US Patent App. 16/920,636, 2021 | | 2021 |
| Integration and Iteration: Using Advanced, High-Content Imaging and Single-Cell Gene Expression Analysis to Uncover Unique Aspects of Follicular Lymphoma Biology AJ Radtke, AL Shaffer III, S Pittaluga, A Bagaev, N Thakur, T Davies-Hill, ... Blood 136, 9-10, 2020 | | 2020 |
| Evolutionary history of rearrangements in Yersinia spp N Dranenko, Y Lozinsky, V Khalaycheva, A Kalinina, O Bochkareva | | 2011 |
| UNDERSTANDING THE EVOLUTION OF DOUBLESEX GENE IN INSECT FAMILY LEPIDOPTERA A Dyachenko, E Popova, P Trus, Y Lozinsky, E Nuzhdina, S Baral, ... | | |
