| A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information Y Luo, X Zhao, J Zhou, J Yang, Y Zhang, W Kuang, J Peng, L Chen, ... Nature communications 8 (1), 1-13, 2017 | 385 | 2017 |
| Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex C Luo, CL Keown, L Kurihara, J Zhou, Y He, J Li, R Castanon, J Lucero, ... Science 357 (6351), 600-604, 2017 | 320 | 2017 |
| A deep learning framework for modeling structural features of RNA-binding protein targets S Zhang, J Zhou, H Hu, H Gong, L Chen, C Cheng, J Zeng Nucleic acids research 44 (4), e32-e32, 2016 | 227 | 2016 |
| Simultaneous profiling of 3D genome structure and DNA methylation in single human cells DS Lee, C Luo, J Zhou, S Chandran, A Rivkin, A Bartlett, JR Nery, ... Nature methods 16 (10), 999-1006, 2019 | 104 | 2019 |
| Robust single-cell DNA methylome profiling with snmC-seq2 C Luo, A Rivkin, J Zhou, JP Sandoval, L Kurihara, J Lucero, R Castanon, ... Nature communications 9 (1), 1-6, 2018 | 73 | 2018 |
| A multimodal cell census and atlas of the mammalian primary motor cortex BICC Network Nature 598 (7879), 86, 2021 | 63* | 2021 |
| Robust single-cell Hi-C clustering by convolution-and random-walk–based imputation J Zhou, J Ma, Y Chen, C Cheng, B Bao, J Peng, TJ Sejnowski, JR Dixon, ... Proceedings of the National Academy of Sciences 116 (28), 14011-14018, 2019 | 52 | 2019 |
| Analysis of Ribosome Stalling and Translation Elongation Dynamics by Deep Learning S Zhang, H Hu, J Zhou, X He, T Jiang, J Zeng Cell systems 5 (3), 212-220. e6, 2017 | 51 | 2017 |
| DNA methylation atlas of the mouse brain at single-cell resolution H Liu, J Zhou, W Tian, C Luo, A Bartlett, A Aldridge, J Lucero, JK Osteen, ... Nature 598 (7879), 120-128, 2021 | 31 | 2021 |
| Single nucleus multi-omics identifies human cortical cell regulatory genome diversity C Luo, H Liu, F Xie, EJ Armand, K Siletti, TE Bakken, R Fang, WI Doyle, ... Cell genomics 2 (3), 100107, 2022 | 25* | 2022 |
| Epigenomic diversity of cortical projection neurons in the mouse brain Z Zhang, J Zhou, P Tan, Y Pang, AC Rivkin, MA Kirchgessner, E Williams, ... Nature 598 (7879), 167-173, 2021 | 13 | 2021 |
| ROSE: a deep learning based framework for predicting ribosome stalling S Zhang, H Hu, J Zhou, X He, T Jiang, J Zeng bioRxiv, 067108, 2016 | 12 | 2016 |
| Modeling gene regulatory networks using neural network architectures H Shu, J Zhou, Q Lian, H Li, D Zhao, J Zeng, J Ma Nature Computational Science 1 (7), 491-501, 2021 | 3 | 2021 |
| cOSPREY: A Cloud-Based Distributed Algorithm for Large-Scale Computational Protein Design Y Pan, Y Dong, J Zhou, M Hallen, BR Donald, J Zeng, W Xu Journal of Computational Biology 23 (9), 737-749, 2016 | 3 | 2016 |
| Single-cell multi-omic profiling of chromatin conformation and DNA methylation DS Lee, C Luo, J Zhou, S Chandran, A Rivkin, A Bartlett, JR Nery, ... | 1 | 2019 |
