Jingtian Zhou
Jingtian Zhou
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A network integration approach for drug-target interaction prediction and computational drug repositioning from heterogeneous information
Y Luo, X Zhao, J Zhou, J Yang, Y Zhang, W Kuang, J Peng, L Chen, ...
Nature communications 8 (1), 1-13, 2017
Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex
C Luo, CL Keown, L Kurihara, J Zhou, Y He, J Li, R Castanon, J Lucero, ...
Science 357 (6351), 600-604, 2017
A deep learning framework for modeling structural features of RNA-binding protein targets
S Zhang, J Zhou, H Hu, H Gong, L Chen, C Cheng, J Zeng
Nucleic acids research 44 (4), e32-e32, 2016
Simultaneous profiling of 3D genome structure and DNA methylation in single human cells
DS Lee, C Luo, J Zhou, S Chandran, A Rivkin, A Bartlett, JR Nery, ...
Nature methods 16 (10), 999-1006, 2019
Robust single-cell DNA methylome profiling with snmC-seq2
C Luo, A Rivkin, J Zhou, JP Sandoval, L Kurihara, J Lucero, R Castanon, ...
Nature communications 9 (1), 1-6, 2018
A multimodal cell census and atlas of the mammalian primary motor cortex
BICC Network
Nature 598 (7879), 86, 2021
Robust single-cell Hi-C clustering by convolution-and random-walk–based imputation
J Zhou, J Ma, Y Chen, C Cheng, B Bao, J Peng, TJ Sejnowski, JR Dixon, ...
Proceedings of the National Academy of Sciences 116 (28), 14011-14018, 2019
Analysis of Ribosome Stalling and Translation Elongation Dynamics by Deep Learning
S Zhang, H Hu, J Zhou, X He, T Jiang, J Zeng
Cell systems 5 (3), 212-220. e6, 2017
DNA methylation atlas of the mouse brain at single-cell resolution
H Liu, J Zhou, W Tian, C Luo, A Bartlett, A Aldridge, J Lucero, JK Osteen, ...
Nature 598 (7879), 120-128, 2021
Single nucleus multi-omics identifies human cortical cell regulatory genome diversity
C Luo, H Liu, F Xie, EJ Armand, K Siletti, TE Bakken, R Fang, WI Doyle, ...
Cell genomics 2 (3), 100107, 2022
Epigenomic diversity of cortical projection neurons in the mouse brain
Z Zhang, J Zhou, P Tan, Y Pang, AC Rivkin, MA Kirchgessner, E Williams, ...
Nature 598 (7879), 167-173, 2021
ROSE: a deep learning based framework for predicting ribosome stalling
S Zhang, H Hu, J Zhou, X He, T Jiang, J Zeng
bioRxiv, 067108, 2016
Modeling gene regulatory networks using neural network architectures
H Shu, J Zhou, Q Lian, H Li, D Zhao, J Zeng, J Ma
Nature Computational Science 1 (7), 491-501, 2021
cOSPREY: A Cloud-Based Distributed Algorithm for Large-Scale Computational Protein Design
Y Pan, Y Dong, J Zhou, M Hallen, BR Donald, J Zeng, W Xu
Journal of Computational Biology 23 (9), 737-749, 2016
Single-cell multi-omic profiling of chromatin conformation and DNA methylation
DS Lee, C Luo, J Zhou, S Chandran, A Rivkin, A Bartlett, JR Nery, ...
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