Jordan M Eizenga
Jordan M Eizenga
PhD Student in Bioinformatics, University of California Santa Cruz Genomics Institute
Verified email at ucsc.edu
Title
Cited by
Cited by
Year
Mapping DNA methylation with high-throughput nanopore sequencing
AC Rand, M Jain, JM Eizenga, A Musselman-Brown, HE Olsen, M Akeson, ...
Nature methods 14 (4), 411-413, 2017
2482017
Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology 36 (9), 875-879, 2018
2242018
Genome graphs and the evolution of genome inference
B Paten, AM Novak, JM Eizenga, E Garrison
Genome research 27 (5), 665-676, 2017
1952017
Genotyping structural variants in pangenome graphs using the vg toolkit
G Hickey, D Heller, J Monlong, JA Sibbesen, J Sirén, J Eizenga, ...
Genome biology 21 (1), 1-17, 2020
432020
Genome graphs
AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ...
bioRxiv, 101378, 2017
432017
Superbubbles, ultrabubbles, and cacti
B Paten, JM Eizenga, YM Rosen, AM Novak, E Garrison, G Hickey
Journal of Computational Biology 25 (7), 649-663, 2018
422018
A phylogenetic approach for haplotype analysis of sequence data from complex mitochondrial mixtures
SH Vohr, R Gordon, JM Eizenga, HA Erlich, CD Calloway, RE Green
Forensic Science International: Genetics 30, 93-105, 2017
272017
Sequence variation aware genome references and read mapping with the variation graph toolkit
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
bioRxiv, 234856, 2017
252017
Pangenome graphs
JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ...
Annual review of genomics and human genetics 21, 139-162, 2020
212020
Aerosol microbiome over the Mediterranean Sea diversity and abundance
E Mescioglu, E Rahav, N Belkin, P Xian, JM Eizenga, A Vichik, B Herut, ...
Atmosphere 10 (8), 440, 2019
122019
Modelling haplotypes with respect to reference cohort variation graphs
Y Rosen, J Eizenga, B Paten
Bioinformatics 33 (14), i118-i123, 2017
92017
Cytosine variant calling with high-throughput nanopore sequencing
AC Rand, M Jain, J Eizenga, A Musselman-Brown, HE Olsen, M Akeson, ...
bioRxiv, 047134, 2016
92016
Genome Graphs. bioRxiv. 2017
AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ...
Google Scholar, 0
7
Efficient dynamic variation graphs
JM Eizenga, AM Novak, E Kobayashi, F Villani, C Cisar, S Heumos, ...
Bioinformatics 36 (21), 5139-5144, 2020
62020
Genome graphs. bioRxiv
AM Novak, G Hickey, E Garrison, S Blum, A Connelly, A Dilthey, ...
62017
Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit
J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ...
Biorxiv, 2020.12. 04.412486, 2021
52021
Distance indexing and seed clustering in sequence graphs
X Chang, J Eizenga, AM Novak, J Sirén, B Paten
Bioinformatics 36 (Supplement_1), i146-i153, 2020
52020
A flow procedure for linearization of genome sequence graphs
D Haussler, M Smuga-Otto, JM Eizenga, B Paten, AM Novak, S Nikitin, ...
Journal of Computational Biology 25 (7), 664-676, 2018
52018
Conserved novel ORFs in the mitochondrial genome of the ctenophore Beroe forskalii
DT Schultz, JM Eizenga, RB Corbett-Detig, WR Francis, LM Christianson, ...
PeerJ 8, e8356, 2020
42020
Haplotype-aware variant calling enables high accuracy in nanopore long-reads using deep neural networks
K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ...
bioRxiv, 2021
32021
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Articles 1–20