Ron Shamir
Ron Shamir
Professor of Computer Science and Bioinformatics, Tel Aviv University
Verified email at - Homepage
Cited by
Cited by
Clustering gene expression patterns
A Ben-Dor, Z Yakhini
Proceedings of the third annual international conference on Computational …, 1999
Wisdom of crowds for robust gene network inference
D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ...
Nature methods 9 (8), 796-804, 2012
Modelling and analysis of gene regulatory networks
G Karlebach, R Shamir
Nature reviews Molecular cell biology 9 (10), 770-780, 2008
Network‐based prediction of protein function
R Sharan, I Ulitsky, R Shamir
Molecular systems biology 3 (1), 88, 2007
Discovering statistically significant biclusters in gene expression data
A Tanay, R Sharan, R Shamir
Bioinformatics 18 (suppl_1), S136-S144, 2002
Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture
LC Laurent, I Ulitsky, I Slavin, H Tran, A Schork, R Morey, C Lynch, ...
Cell stem cell 8 (1), 106-118, 2011
Quantification of protein half-lives in the budding yeast proteome
A Belle, A Tanay, L Bitincka, R Shamir, EK O’Shea
Proceedings of the National Academy of Sciences 103 (35), 13004-13009, 2006
A clustering algorithm based on graph connectivity
E Hartuv, R Shamir
Information processing letters 76 (4-6), 175-181, 2000
CLICK: a clustering algorithm with applications to gene expression analysis
R Sharan, R Shamir
Proc Int Conf Intell Syst Mol Biol 8 (307), 16, 2000
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
A Tanay, R Sharan, M Kupiec, R Shamir
Proceedings of the National Academy of Sciences 101 (9), 2981-2986, 2004
CLICK and EXPANDER: a system for clustering and visualizing gene expression data
R Sharan, A Maron-Katz, R Shamir
Bioinformatics 19 (14), 1787-1799, 2003
Multi-omic and multi-view clustering algorithms: review and cancer benchmark
N Rappoport, R Shamir
Nucleic acids research 46 (20), 10546-10562, 2018
Faster and simpler algorithm for sorting signed permutations by reversals
H Kaplan, R Shamir, RE Tarjan
Proceedings of the first annual international conference on Computational …, 1997
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126-134, 2013
Regulatory networks define phenotypic classes of human stem cell lines
FJ Müller, LC Laurent, D Kostka, I Ulitsky, R Williams, C Lu, IH Park, ...
Nature 455 (7211), 401-405, 2008
Cluster graph modification problems
R Shamir, R Sharan, D Tsur
Discrete Applied Mathematics 144 (1-2), 173-182, 2004
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells
R Elkon, C Linhart, R Sharan, R Shamir, Y Shiloh
Genome research 13 (5), 773-780, 2003
A fast algorithm for joint reconstruction of ancestral amino acid sequences
T Pupko, I Pe, R Shamir, D Graur
Molecular biology and evolution 17 (6), 890-896, 2000
A global view of pleiotropy and phenotypically derived gene function in yeast
AM Dudley, DM Janse, A Tanay, R Shamir, GMD Church
Molecular systems biology 1 (1), 2005.0001, 2005
EXPANDER – an integrative program suite for microarray data analysis
R Shamir, A Maron-Katz, A Tanay, C Linhart, I Steinfeld, R Sharan, ...
BMC bioinformatics 6, 1-12, 2005
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