| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 2152 | 2022 |
| Versatile genome assembly evaluation with QUAST-LG A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich Bioinformatics 34 (13), i142-i150, 2018 | 919 | 2018 |
| MetaQUAST: evaluation of metagenome assemblies A Mikheenko, V Saveliev, A Gurevich Bioinformatics 32 (7), 1088-1090, 2016 | 581 | 2016 |
| Complete genomic and epigenetic maps of human centromeres N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ... Science 376 (6588), eabl4178, 2022 | 308 | 2022 |
| The structure, function and evolution of a complete human chromosome 8 GA Logsdon, MR Vollger, PH Hsieh, Y Mao, MA Liskovykh, S Koren, ... Nature 593 (7857), 101-107, 2021 | 278 | 2021 |
| Dereplication of microbial metabolites through database search of mass spectra H Mohimani, A Gurevich, A Shlemov, A Mikheenko, A Korobeynikov, ... Nature communications 9 (1), 4035, 2018 | 278 | 2018 |
| Dereplication of peptidic natural products through database search of mass spectra H Mohimani, A Gurevich, A Mikheenko, N Garg, LF Nothias, A Ninomiya, ... Nature chemical biology 13 (1), 30-37, 2017 | 236 | 2017 |
| The complete sequence of a human Y chromosome A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ... Nature 621 (7978), 344-354, 2023 | 190 | 2023 |
| Icarus: visualizer for de novo assembly evaluation A Mikheenko, G Valin, A Prjibelski, V Saveliev, A Gurevich Bioinformatics 32 (21), 3321-3323, 2016 | 136 | 2016 |
| Increased diversity of peptidic natural products revealed by modification-tolerant database search of mass spectra A Gurevich, A Mikheenko, A Shlemov, A Korobeynikov, H Mohimani, ... Nature microbiology 3 (3), 319-327, 2018 | 91 | 2018 |
| Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue SA Hardwick, W Hu, A Joglekar, L Fan, PG Collier, C Foord, J Balacco, ... Nature biotechnology 40 (7), 1082-1092, 2022 | 78 | 2022 |
| Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies AM Mc Cartney, K Shafin, M Alonge, AV Bzikadze, G Formenti, ... Nature methods 19 (6), 687-695, 2022 | 74 | 2022 |
| MetaMiner: a scalable peptidogenomics approach for discovery of ribosomal peptide natural products with blind modifications from microbial communities L Cao, A Gurevich, KL Alexander, CB Naman, T Leão, E Glukhov, ... Cell systems 9 (6), 600-608. e4, 2019 | 71 | 2019 |
| Accurate isoform discovery with IsoQuant using long reads AD Prjibelski, A Mikheenko, A Joglekar, A Smetanin, J Jarroux, ... Nature Biotechnology 41 (7), 915-918, 2023 | 58 | 2023 |
| TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats A Mikheenko, AV Bzikadze, A Gurevich, KH Miga, PA Pevzner Bioinformatics 36 (Supplement_1), i75-i83, 2020 | 56* | 2020 |
| Systematic assessment of long-read RNA-seq methods for transcript identification and quantification FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ... Nature methods, 1-15, 2024 | 47 | 2024 |
| Extending rnaSPAdes functionality for hybrid transcriptome assembly AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ... BMC bioinformatics 21, 1-9, 2020 | 36 | 2020 |
| Sequencing of individual barcoded cDNAs using Pacific Biosciences and Oxford Nanopore Technologies reveals platform-specific error patterns A Mikheenko, AD Prjibelski, A Joglekar, HU Tilgner Genome Research 32 (4), 726-737, 2022 | 23 | 2022 |
| A circuit synthesis technique based on network determinant expansion V Filaretov, K Gorshkov, A Mikheenko 2012 International Conference on Synthesis, Modeling, Analysis and …, 2012 | 20 | 2012 |
| Assembly Graph Browser: interactive visualization of assembly graphs A Mikheenko, M Kolmogorov Bioinformatics 35 (18), 3476-3478, 2019 | 19 | 2019 |
Alexey GurevichJun. Prof. of Bioinformatics, HIPS & Saarland UniversityVerified email at helmholtz-hips.de
