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Sahar AL Seesi
Sahar AL Seesi
Associate Professor, Computer Science, Southern Connecticut State University
Подтвержден адрес электронной почты в домене southernct.edu
Название
Процитировано
Процитировано
Год
Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity
F Duan, J Duitama, S Al Seesi, CM Ayres, SA Corcelli, AP Pawashe, ...
Journal of Experimental Medicine 211 (11), 2231-2248, 2014
4282014
Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction
DK Wells, MM van Buuren, KK Dang, VM Hubbard-Lucey, KCF Sheehan, ...
Cell 183 (3), 818-834. e13, 2020
3352020
Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates
S Al Seesi, YT Tiagueu, A Zelikovsky, II Măndoiu
BMC genomics 15, 1-10, 2014
632014
Minor spliceosome inactivation causes microcephaly, owing to cell cycle defects and death of self-amplifying radial glial cells
M Baumgartner, AM Olthof, GS Aquino, KC Hyatt, C Lemoine, K Drake, ...
Development 145 (17), dev166322, 2018
552018
Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data
I Mandric, Y Temate-Tiagueu, T Shcheglova, S Al Seesi, A Zelikovsky, ...
Bioinformatics 33 (20), 3302-3304, 2017
492017
Determination of dosage compensation of the mammalian X chromosome by RNA-seq is dependent on analytical approach
NK Jue, MB Murphy, SD Kasowitz, SM Qureshi, CJ Obergfell, S Elsisi, ...
BMC genomics 14, 1-14, 2013
412013
An unbiased approach to defining bona fide cancer neoepitopes that elicit immune-mediated cancer rejection
CA Brennick, MM George, MM Moussa, AT Hagymasi, S Al Seesi, ...
The Journal of clinical investigation 131 (3), 2021
282021
Replication-dependent histone genes are actively transcribed in differentiating and aging retinal neurons
AR Banday, M Baumgartner, S Al Seesi, DKP Karunakaran, A Venkatesh, ...
Cell cycle 13 (16), 2526-2541, 2014
272014
An integer programming approach to novel transcript reconstruction from paired-end RNA-Seq reads
S Mangul, A Caciula, S Al Seesi, D Brinza, AR Banday, R Kanadia
Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012
262012
Minor splicing sn RNA s are enriched in the developing mouse CNS and are crucial for survival of differentiating retinal neurons
M Baumgartner, C Lemoine, S Al Seesi, DKP Karunakaran, N Sturrock, ...
Developmental Neurobiology 75 (9), 895-907, 2015
242015
Transcriptome assembly and quantification from Ion Torrent RNA-Seq data
S Mangul, A Caciula, S Al Seesi, D Brinza, I Mӑndoiu, A Zelikovsky
BMC genomics 15, 1-11, 2014
212014
Inferring metabolic pathway activity levels from RNA-Seq data
Y Temate-Tiagueu, SA Seesi, M Mathew, I Mandric, A Rodriguez, K Bean, ...
BMC genomics 17, 493-503, 2016
142016
Effects of maternal nutrition on the expression of genomic imprinted genes in ovine fetuses
J Duan, M Zhang, K Flock, SA Seesi, I Mandoiu, A Jones, E Johnson, ...
Epigenetics 13 (8), 793-807, 2018
122018
Network-based bioinformatics analysis of spatio-temporal RNA-Seq data reveals transcriptional programs underpinning normal and aberrant retinal development
DKP Karunakaran, S Al Seesi, AR Banday, M Baumgartner, A Olthof, ...
BMC genomics 17, 477-492, 2016
112016
Dosage compensation and gene expression of the X chromosome in sheep
J Duan, K Flock, N Jue, M Zhang, A Jones, SA Seesi, I Mandoiu, S Pillai, ...
G3: Genes, Genomes, Genetics 9 (1), 305-314, 2019
92019
Improved algorithms for parsing ESLTAGs: A grammatical model suitable for RNA pseudoknots
S Rajasekaran, S Al Seesi, RA Ammar
IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (4), 619-627, 2010
82010
Genomics-guided immunotherapy of human epithelial ovarian cancer
S Al Seesi, F Duan, II Mandoiu, PK Srivastava, A Kueck
Translational Cardiometabolic Genomic Medicine, 237-250, 2016
42016
Pseudoknot Identification through Learning TAGRNA
SA Seesi, S Rajasekaran, R Ammar
Pattern Recognition in Bioinformatics: Third IAPR International Conference …, 2008
42008
Transcriptome reconstruction and quantification from RNA sequencing Data
S Al Seesi, S Mangul, A Caciula, A Zelikovsky, I Măndoiu
Genome analysis: current procedures and applications, 39, 2014
32014
A user-centered design of a major and minor intron annotation database (MMIAD)
R ElKharboutly, K Gorman, W Eccles, SA Seesi
Proceedings of the International Conferences Interfaces and Human Computer …, 2020
22020
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Статьи 1–20