Dent Earl
Dent Earl
Staff Software Engineer at Google. Formerly of UCSC, UCLA.
Verified email at soe.ucsc.edu - Homepage
Title
Cited by
Cited by
Year
STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
DA Earl
Conservation genetics resources 4 (2), 359-361, 2012
93232012
Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication
BM vonHoldt, JP Pollinger, KE Lohmueller, E Han, HG Parker, P Quignon, ...
Nature 464 (7290), 898-902, 2010
7392010
Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM
CJ Vaske, SC Benz, JZ Sanborn, D Earl, C Szeto, J Zhu, D Haussler, ...
Bioinformatics 26 (12), i237-i245, 2010
7162010
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 2047-217X-2-10, 2013
6642013
Assemblathon 1: a competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
5512011
A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids
BM vonHoldt, JP Pollinger, DA Earl, JC Knowles, AR Boyko, H Parker, ...
Genome Research 21 (8), 1294-1305, 2011
315*2011
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ...
Science 346 (6215), 2014
2732014
Cactus: Algorithms for genome multiple sequence alignment
B Paten, D Earl, N Nguyen, M Diekhans, D Zerbino, D Haussler
Genome research 21 (9), 1512-1528, 2011
2122011
The genealogy and genetic viability of reintroduced Yellowstone grey wolves
BM Vonholdt, DR Stahler, DW Smith, DA Earl, JP Pollinger, RK Wayne
Molecular ecology 17 (1), 252-274, 2008
1952008
Cactus graphs for genome comparisons
B Paten, M Diekhans, D Earl, JS John, J Ma, B Suh, D Haussler
Journal of Computational Biology 18 (3), 469-481, 2011
1002011
Structure harvester v0. 6.1
DA Earl
972011
Retrotransposition of gene transcripts leads to structural variation in mammalian genomes
AD Ewing, TJ Ballinger, D Earl, CC Harris, L Ding, RK Wilson, D Haussler
Genome biology 14 (3), 1-14, 2013
932013
Alignathon: a competitive assessment of whole-genome alignment methods
D Earl, N Nguyen, G Hickey, RS Harris, S Fitzgerald, K Beal, I Seledtsov, ...
Genome research 24 (12), 2077-2089, 2014
902014
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci
J Lilue, AG Doran, IT Fiddes, M Abrudan, J Armstrong, R Bennett, ...
Nature genetics 50 (11), 1574-1583, 2018
872018
HAL: a hierarchical format for storing and analyzing multiple genome alignments
G Hickey, B Paten, D Earl, D Zerbino, D Haussler
Bioinformatics 29 (10), 1341-1342, 2013
832013
Building a pan-genome reference for a population
N Nguyen, G Hickey, DR Zerbino, B Raney, D Earl, J Armstrong, WJ Kent, ...
Journal of Computational Biology 22 (5), 387-401, 2015
532015
BM vonHoldt. 2012
DA Earl
STRUCTURE HARVESTER: a website and program for, 0
50
Identification of recent hybridization between gray wolves and domesticated dogs by SNP genotyping
JP Pollinger, DA Earl, HG Parker, EA Ostrander, RK Wayne
Mammalian Genome 24 (1), 80-88, 2013
442013
Structure Harvester v0. 3
DA Earl
See http://taylor0. biology. ucla. edu/struct_harvest, 2009
442009
Rangewide microsatellite phylogeography of the endangered tidewater goby, Eucyclogobius newberryi (Teleostei: Gobiidae), a genetically subdivided coastal fish with limited …
DA Earl, KD Louie, C Bardeleben, CC Swift, DK Jacobs
Conservation Genetics 11 (1), 103-114, 2010
392010
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Articles 1–20