Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling SJ Salipante, T Kawashima, C Rosenthal, DR Hoogestraat, LA Cummings, ... Applied and environmental microbiology 80 (24), 7583-7591, 2014 | 366 | 2014 |
Rapid 16S rRNA next-generation sequencing of polymicrobial clinical samples for diagnosis of complex bacterial infections SJ Salipante, DJ Sengupta, C Rosenthal, G Costa, J Spangler, EH Sims, ... PloS one 8 (5), e65226, 2013 | 239 | 2013 |
Clinical next generation sequencing outperforms standard microbiological culture for characterizing polymicrobial samples LA Cummings, K Kurosawa, DR Hoogestraat, DJ SenGupta, F Candra, ... Clinical chemistry 62 (11), 1465-1473, 2016 | 80 | 2016 |
Comprehensive evaluation of complex polymicrobial specimens using next generation sequencing and standard microbiological culture LA Cummings, DR Hoogestraat, SL Rassoulian-Barrett, CA Rosenthal, ... Scientific Reports 10 (1), 5446, 2020 | 24 | 2020 |
Improved Species-Level Clinical Identification of Enterobacteriaceae through Broad-Range dnaJ PCR and Sequencing K McLean, CA Rosenthal, D Sengupta, J Owens, BT Cookson, ... Journal of clinical microbiology 57 (11), 10.1128/jcm. 00986-19, 2019 | 24 | 2019 |
Molecular diagnosis of Actinomadura madurae infection by 16S rRNA deep sequencing SJ Salipante, DJ SenGupta, DR Hoogestraat, LA Cummings, BH Bryant, ... Journal of Clinical Microbiology 51 (12), 4262-4265, 2013 | 20 | 2013 |
Sensitive identification of bacterial DNA in clinical specimens by broad-range 16S rRNA gene enrichment S Rassoulian Barrett, NG Hoffman, C Rosenthal, A Bryan, DA Marshall, ... Journal of Clinical Microbiology 58 (12), 10.1128/jcm. 01605-20, 2020 | 12 | 2020 |
Characterizing the molecular composition and diagnostic potential of Mycobacterium tuberculosis urinary cell-free DNA using next-generation sequencing A Oreskovic, A Waalkes, EA Holmes, CA Rosenthal, DPK Wilson, ... International journal of infectious diseases 112, 330-337, 2021 | 9 | 2021 |
Robust harmonization of microbiome studies by phylogenetic scaffolding with MaLiAmPi SS Minot, B Garb, A Roldan, A Tang, T Oskotsky, C Rosenthal, ... bioRxiv, 2022.07. 26.501561, 2022 | 5 | 2022 |
MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies SS Minot, B Garb, A Roldan, AS Tang, TT Oskotsky, C Rosenthal, ... Cell Reports Methods 3 (11), 2023 | 2 | 2023 |
Unbiased sequencing of Mycobacterium tuberculosis urinary cell-free DNA reveals extremely short fragment lengths A Oreskovic, A Waalkes, EA Holmes, CA Rosenthal, DPK Wilson, ... medRxiv, 2021.06. 22.21258723, 2021 | 1 | 2021 |