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Ilia Minkin
Ilia Minkin
Verified email at psu.edu
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Year
Sibelia: a scalable and comprehensive synteny block generation tool for closely related microbial genomes
I Minkin, A Patel, M Kolmogorov, N Vyahhi, S Pham
Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia …, 2013
1122013
TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes
I Minkin, S Pham, P Medvedev
Bioinformatics 33 (24), 4024-4032, 2017
792017
Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZ
I Minkin, P Medvedev
Nature communications 11 (1), 6327, 2020
492020
C-Sibelia: an easy-to-use and highly accurate tool for bacterial genome comparison
I Minkin, H Pham, E Starostina, N Vyahhi, S Pham
F1000Research 2, 2013
242013
A strategy for building and using a human reference pangenome
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8 (1751), 1751, 2021
132021
Scalable pairwise whole-genome homology mapping of long genomes with BubbZ
I Minkin, P Medvedev
IScience 23 (6), 101224, 2020
62020
Lecture notes in computer science
I Minkin, A Patel, M Kolmogorov, N Vyahhi, S Pham
LNBI, Springer, Berlin 8126, 215-229, 2013
52013
A Strategy for Building and Using a Human Reference Pangenome [Version 2; Peer Review: 2 approved]
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8, 2021
2021
Applications of the Compacted de Bruijn Graph in Comparative Genomics
I Minkin
The Pennsylvania State University, 2020
2020
genome comparison [version 1; referees: 2 approved]
I Minkin, H Pham, E Starostina, N Vyahhi, S Pham
2013
A strategy for building and using a human reference pangenome [version 1; peer review: awaiting peer review]
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
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