| Sibelia: a scalable and comprehensive synteny block generation tool for closely related microbial genomes I Minkin, A Patel, M Kolmogorov, N Vyahhi, S Pham Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia …, 2013 | 134* | 2013 |
| TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes I Minkin, S Pham, P Medvedev Bioinformatics 33 (24), 4024-4032, 2017 | 110 | 2017 |
| Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZ I Minkin, P Medvedev Nature communications 11 (1), 6327, 2020 | 79 | 2020 |
| C-Sibelia: an easy-to-use and highly accurate tool for bacterial genome comparison I Minkin, H Pham, E Starostina, N Vyahhi, S Pham F1000Research 2, 2013 | 32 | 2013 |
| Structure-guided isoform identification for the human transcriptome MJ Sommer, S Cha, A Varabyou, N Rincon, S Park, I Minkin, M Pertea, ... Elife 11, e82556, 2022 | 28* | 2022 |
| CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure A Varabyou, MJ Sommer, B Erdogdu, I Shinder, I Minkin, KH Chao, S Park, ... Genome biology 24 (1), 249, 2023 | 16 | 2023 |
| A strategy for building and using a human reference pangenome B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ... F1000Research 8, 2019 | 16 | 2019 |
| Scalable pairwise whole-genome homology mapping of long genomes with BubbZ I Minkin, P Medvedev IScience 23 (6), 2020 | 9 | 2020 |
| Conservation assessment of human splice site annotation based on a 470-genome alignment I Minkin, SL Salzberg bioRxiv, 2023 | | 2023 |
| Applications of the Compacted de Bruijn Graph in Comparative Genomics I Minkin The Pennsylvania State University, 2020 | | 2020 |
| QUALITY ASSESSMENT OF SPLICE SITE ANNOTATION BASED ON I Minkin, SL Salzberg | | |
Paul MedvedevPenn StateVerified email at cse.psu.edu
