Brendan L. O'Connell
Brendan L. O'Connell
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Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
NH Putnam, BL O'Connell, JC Stites, BJ Rice, M Blanchette, R Calef, ...
Genome research 26 (3), 342-350, 2016
The Human Tumor Atlas Network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
Natural selection shaped the rise and fall of passenger pigeon genomic diversity
GGR Murray, AER Soares, BJ Novak, NK Schaefer, JA Cahill, AJ Baker, ...
Science 358 (6365), 951-954, 2017
Deeply conserved synteny resolves early events in vertebrate evolution
REGDSR Oleg Simakov, Ferdinand Marlétaz, Jia-Xing Yue, Brendan O’Connell ...
Nature Ecology & Evolution 4, 820–830, 2020
Improved reference genome for the domestic horse increases assembly contiguity and composition
TS Kalbfleisch, ES Rice, MS DePriest, BP Walenz, MS Hestand, ...
Communications biology 1 (1), 1-8, 2018
Epigenetic maintenance of topological domains in the highly rearranged gibbon genome
NH Lazar, KA Nevonen, B O'Connell, C McCann, RJ O'Neill, RE Green, ...
Genome research 28 (7), 983-997, 2018
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling
ES Rice, S Kohno, JS John, S Pham, J Howard, LF Lareau, BL O'Connell, ...
Genome research 27 (5), 686-696, 2017
Puma genomes from North and South America provide insights into the genomic consequences of inbreeding
NF Saremi, MA Supple, A Byrne, JA Cahill, LL Coutinho, L Dalén, ...
Nature communications 10 (1), 1-10, 2019
Squeezing water from a stone: high-throughput sequencing from a 145-year old holotype resolves (barely) a cryptic species problem in flying lizards
JA McGuire, DD Cotoras, B O’Connell, SZS Lawalata, CY Wang-Claypool, ...
PeerJ 6, e4470, 2018
EquCab3, an Updated Reference Genome for the Domestic Horse
TS Kalbfleisch, E Rice, MS DePriest, BP Walenz, MS Hestand, ...
bioRxiv, 306928, 2018
Erosion of the Epigenetic Landscape and Loss of Cellular Identity as a Cause of Aging in Mammals
JH Yang, PT Griffin, DL Vera, JK Apostolides, M Hayano, MV Meer, ...
High-content single-cell combinatorial indexing
RM Mulqueen, D Pokholok, BL O'Connell, CA Thornton, F Zhang, ...
bioRxiv, 2021
The complete mitochondrial genome of the black surfperch, Embiotoca jacksoni: Selection and substitution rates among surfperches (Embiotocidae)
GC Longo, B O'Connell, RE Green, G Bernardi
Marine genomics 28, 107-112, 2016
An annotated draft genome for the Andean bear, Tremarctos ornatus
NF Saremi, J Oppenheimer, C Vollmers, B O’Connell, SA Milne, A Byrne, ...
Journal of Heredity, 2021
Cas12a-Capture: a novel, low-cost, and scalable method for targeted sequencing
TL Mighell, A Nishida, BL O'Connell, CV Miller, S Grindstaff, CA Thornton, ...
bioRxiv, 2020
Developing and Applying Chromatin Proximity Ligation Methods
BL O'Connell
UC Santa Cruz, 2017
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