Brendan L. O'Connell
Brendan L. O'Connell
Verified email at ohsu.edu
Title
Cited by
Cited by
Year
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage
NH Putnam, BL O'Connell, JC Stites, BJ Rice, M Blanchette, R Calef, ...
Genome research 26 (3), 342-350, 2016
4722016
The Human Tumor Atlas Network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
1252020
Natural selection shaped the rise and fall of passenger pigeon genomic diversity
GGR Murray, AER Soares, BJ Novak, NK Schaefer, JA Cahill, AJ Baker, ...
Science 358 (6365), 951-954, 2017
882017
Deeply conserved synteny resolves early events in vertebrate evolution
REGDSR Oleg Simakov, Ferdinand Marlétaz, Jia-Xing Yue, Brendan O’Connell ...
Nature Ecology & Evolution 4, 820–830, 2020
742020
Improved reference genome for the domestic horse increases assembly contiguity and composition
TS Kalbfleisch, ES Rice, MS DePriest, BP Walenz, MS Hestand, ...
Communications biology 1 (1), 1-8, 2018
692018
Epigenetic maintenance of topological domains in the highly rearranged gibbon genome
NH Lazar, KA Nevonen, B O'Connell, C McCann, RJ O'Neill, RE Green, ...
Genome research 28 (7), 983-997, 2018
512018
Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling
ES Rice, S Kohno, JS John, S Pham, J Howard, LF Lareau, BL O'Connell, ...
Genome research 27 (5), 686-696, 2017
342017
Puma genomes from North and South America provide insights into the genomic consequences of inbreeding
NF Saremi, MA Supple, A Byrne, JA Cahill, LL Coutinho, L Dalén, ...
Nature communications 10 (1), 1-10, 2019
282019
Squeezing water from a stone: high-throughput sequencing from a 145-year old holotype resolves (barely) a cryptic species problem in flying lizards
JA McGuire, DD Cotoras, B O’Connell, SZS Lawalata, CY Wang-Claypool, ...
PeerJ 6, e4470, 2018
242018
EquCab3, an Updated Reference Genome for the Domestic Horse
TS Kalbfleisch, E Rice, MS DePriest, BP Walenz, MS Hestand, ...
bioRxiv, 306928, 2018
172018
Erosion of the Epigenetic Landscape and Loss of Cellular Identity as a Cause of Aging in Mammals
JH Yang, PT Griffin, DL Vera, JK Apostolides, M Hayano, MV Meer, ...
152019
High-content single-cell combinatorial indexing
RM Mulqueen, D Pokholok, BL O'Connell, CA Thornton, F Zhang, ...
bioRxiv, 2021
22021
The complete mitochondrial genome of the black surfperch, Embiotoca jacksoni: Selection and substitution rates among surfperches (Embiotocidae)
GC Longo, B O'Connell, RE Green, G Bernardi
Marine genomics 28, 107-112, 2016
22016
An annotated draft genome for the Andean bear, Tremarctos ornatus
NF Saremi, J Oppenheimer, C Vollmers, B O’Connell, SA Milne, A Byrne, ...
Journal of Heredity, 2021
12021
Cas12a-Capture: a novel, low-cost, and scalable method for targeted sequencing
TL Mighell, A Nishida, BL O'Connell, CV Miller, S Grindstaff, CA Thornton, ...
bioRxiv, 2020
2020
Developing and Applying Chromatin Proximity Ligation Methods
BL O'Connell
UC Santa Cruz, 2017
2017
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Articles 1–16