| Assembly of long, error-prone reads using repeat graphs M Kolmogorov, J Yuan, Y Lin, PA Pevzner Nature biotechnology 37 (5), 540-546, 2019 | 3400 | 2019 |
| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 2152 | 2022 |
| metaFlye: scalable long-read metagenome assembly using repeat graphs M Kolmogorov, DM Bickhart, B Behsaz, A Gurevich, M Rayko, SB Shin, ... Nature Methods, 1-8, 2020 | 593 | 2020 |
| Assembly of long error-prone reads using de Bruijn graphs Y Lin, J Yuan, M Kolmogorov, MW Shen, M Chaisson, PA Pevzner Proceedings of the National Academy of Sciences 113 (52), E8396-E8405, 2016 | 320 | 2016 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 227 | 2022 |
| Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci J Lilue, AG Doran, IT Fiddes, M Abrudan, J Armstrong, R Bennett, ... Nature Genetics, 1, 2018 | 208 | 2018 |
| Ragout—a reference-assisted assembly tool for bacterial genomes M Kolmogorov, B Raney, B Paten, S Pham Bioinformatics 30 (12), i302-i309, 2014 | 200 | 2014 |
| Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads K Shafin, T Pesout, PC Chang, M Nattestad, A Kolesnikov, S Goel, G Baid, ... Nature methods 18 (11), 1322-1332, 2021 | 175 | 2021 |
| Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ... Nature biotechnology 40 (5), 711-719, 2022 | 151 | 2022 |
| Semi-automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... Nature 611 (7936), 519-531, 2022 | 132 | 2022 |
| Sibelia: a scalable and comprehensive synteny block generation tool for closely related microbial genomes I Minkin, A Patel, M Kolmogorov, N Vyahhi, S Pham Algorithms in Bioinformatics: 13th International Workshop, WABI 2013, Sophia …, 2013 | 130 | 2013 |
| High-quality genome sequences of uncultured microbes by assembly of read clouds A Bishara, EL Moss, M Kolmogorov, AE Parada, Z Weng, A Sidow, ... Nature biotechnology 36 (11), 1067-1075, 2018 | 114 | 2018 |
| Chromosome assembly of large and complex genomes using multiple references M Kolmogorov, J Armstrong, BJ Raney, I Streeter, M Dunn, F Yang, ... Genome research 28 (11), 1720-1732, 2018 | 113 | 2018 |
| Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes D Thybert, M Roller, FCP Navarro, I Fiddes, I Streeter, C Feig, ... Genome research 28 (4), 448-459, 2018 | 95 | 2018 |
| Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads A Bankevich, AV Bzikadze, M Kolmogorov, D Antipov, PA Pevzner Nature biotechnology 40 (7), 1075-1081, 2022 | 77 | 2022 |
| Single-molecule protein identification by sub-nanopore sensors M Kolmogorov, E Kennedy, Z Dong, G Timp, PA Pevzner PLoS computational biology 13 (5), e1005356, 2017 | 75 | 2017 |
| Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation M Kolmogorov, KJ Billingsley, M Mastoras, M Meredith, J Monlong, ... Nature Methods 20 (10), 1483-1492, 2023 | 46 | 2023 |
| Assembly Graph Browser: interactive visualization of assembly graphs A Mikheenko, M Kolmogorov Bioinformatics 35 (18), 3476-3478, 2019 | 19 | 2019 |
| SpectroGene: a tool for proteogenomic annotations using top-down spectra M Kolmogorov, X Liu, PA Pevzner Journal of proteome research 15 (1), 144-151, 2016 | 15 | 2016 |
| viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data D Antipov, M Rayko, M Kolmogorov, PA Pevzner Genome biology 23 (1), 57, 2022 | 14 | 2022 |
Yu LinSchool of Computing, Australian National UniversityVerified email at anu.edu.au
