Jonathan Badger
Jonathan Badger
Staff Scientist, National Cancer Institute
Verified email at nih.gov - Homepage
Title
Cited by
Cited by
Year
Structure, function and diversity of the healthy human microbiome
Human Microbiome Project Consortium
Nature 486 (7402), 207-14, 2012
67252012
A framework for human microbiome research
Human Microbiome Consortium
Nature. E-pub ahead of print. doi 10, 2012
1696*2012
The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
HP Klenk, RA Clayton, JF Tomb, O White, KE Nelson, KA Ketchum, ...
Nature 390 (6658), 364-370, 1997
16701997
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
C Bowler, AE Allen, JH Badger, J Grimwood, K Jabbari, A Kuo, ...
Nature 456 (7219), 239-244, 2008
15532008
Comparative genomics of trypanosomatid parasitic protozoa
NM El-Sayed, PJ Myler, G Blandin, M Berriman, J Crabtree, G Aggarwal, ...
Science 309 (5733), 404-409, 2005
8992005
The Ectocarpus genome and the independent evolution of multicellularity in brown algae
JM Cock, L Sterck, P Rouzé, D Scornet, AE Allen, G Amoutzias, ...
Nature 465 (7298), 617-621, 2010
8212010
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
JA Eisen, RS Coyne, M Wu, D Wu, M Thiagarajan, JR Wortman, ...
PLoS biology 4 (9), e286, 2006
7422006
Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils
NL Ward, JF Challacombe, PH Janssen, B Henrissat, PM Coutinho, M Wu, ...
Applied and environmental microbiology 75 (7), 2046-2056, 2009
7292009
A catalog of reference genomes from the human microbiome
Human Microbiome Jumpstart Reference Strains Consortium
Science 328 (5981), 994-999, 2010
7112010
An information-based sequence distance and its application to whole mitochondrial genome phylogeny
M Li, JH Badger, X Chen, S Kwong, P Kearney, H Zhang
Bioinformatics 17 (2), 149-154, 2001
6592001
Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species
DE Fouts, EF Mongodin, RE Mandrell, WG Miller, DA Rasko, J Ravel, ...
PLoS biology 3 (1), e15, 2005
6202005
Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas
AZ Worden, JH Lee, T Mock, P Rouzé, MP Simmons, AL Aerts, AE Allen, ...
Science 324 (5924), 268-272, 2009
6132009
Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus
ND Fedorova, N Khaldi, VS Joardar, R Maiti, P Amedeo, MJ Anderson, ...
PLoS genetics 4 (4), e1000046, 2008
5062008
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum
MA Van Den Berg, R Albang, K Albermann, JH Badger, JM Daran, ...
Nature biotechnology 26 (10), 1161-1168, 2008
4732008
CRITICA: coding region identification tool invoking comparative analysis.
JH Badger, GJ Olsen
Molecular biology and evolution 16 (4), 512-524, 1999
4651999
Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species
PJ Haney, JH Badger, GL Buldak, CI Reich, CR Woese, GJ Olsen
Proceedings of the National Academy of Sciences 96 (7), 3578-3583, 1999
3881999
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
N Ziemert, S Podell, K Penn, JH Badger, E Allen, PR Jensen
PloS one 7 (3), e34064, 2012
3492012
Wild mouse gut microbiota promotes host fitness and improves disease resistance
SP Rosshart, BG Vassallo, D Angeletti, DS Hutchinson, AP Morgan, ...
Cell 171 (5), 1015-1028. e13, 2017
3392017
Complete Genome Sequence of the N2-Fixing Broad Host Range Endophyte Klebsiella pneumoniae 342 and Virulence Predictions Verified in Mice
DE Fouts, HL Tyler, RT DeBoy, S Daugherty, Q Ren, JH Badger, ...
PLoS genetics 4 (7), e1000141, 2008
2992008
Genome sequence of Synechococcus CC9311: insights into adaptation to a coastal environment
B Palenik, Q Ren, CL Dupont, GS Myers, JF Heidelberg, JH Badger, ...
Proceedings of the National Academy of Sciences 103 (36), 13555-13559, 2006
2522006
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Articles 1–20