Anton Bankevich

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Citations	25501	19485
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Dmitry AntipovVisiting fellow, National Institutes of HealthVerified email at nih.gov
Alexey GurevichJun. Prof. of Bioinformatics, HIPS & Saarland UniversityVerified email at helmholtz-hips.de
Andrey PrjibelskiPostdoctoral Researcher @ University of HelsinkiVerified email at helsinki.fi
Sergey NurkSenior Applications Bioinformatician, Oxford Nanopore TechnologiesVerified email at nanoporetech.com
Max A. AlekseyevGeorge Washington UniversityVerified email at gwu.edu
Alexander SirotkinNational Research University Higher School of EconomicsVerified email at hse.ru
Mikhail DvorkinSt. Petersburg Academic UniversityVerified email at rain.ifmo.ru
Alexander S. KulikovSteklov Institute of Mathematics at St. PetersburgVerified email at logic.pdmi.ras.ru
Nikolay Vyahhi-Verified email at bioinf.spbau.ru
Sergey NikolenkoSteklov Institute of Mathematics at St. Petersburg, RussiaVerified email at logic.pdmi.ras.ru
Anton KorobeynikovVerified email at korobeynikov.info
Ramunas StepanauskasBigelow Laboratory for Ocean SciencesVerified email at bigelow.org
Tanja WoykeDOE Joint Genome InstituteVerified email at lbl.gov
Jeffrey S. McLeanProfessor University of WashingtonVerified email at uw.edu
Yana SafonovaPenn State UniversityVerified email at psu.edu
Mikhail KolmogorovStadtman Investigator, National Cancer Institute, NIHVerified email at nih.gov
Andrey V. BzikadzeAmazonVerified email at amazon.com
Tatiana DvorkinaSaint-Petersburg State UniversityVerified email at spbu.ru
Keith H TurnerSenior Applied Scientist, AmazonVerified email at amazon.com
Alla Lapidus

Anton Bankevich

PSU

Verified email at psu.edu - Homepage

Bioinformatics


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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012	22854	2012
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013	2020*	2013
ExSPAnder: a universal repeat resolver for DNA fragment assembly AD Prjibelski, I Vasilinetc, A Bankevich, A Gurevich, T Krivosheeva, ... Bioinformatics 30 (12), i293-i301, 2014	134	2014
Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly S Kim, YS Cho, HM Kim, O Chung, H Kim, S Jho, H Seomun, J Kim, ... Genome biology 17, 1-12, 2016	118	2016
dipSPAdes: assembler for highly polymorphic diploid genomes Y Safonova, A Bankevich, PA Pevzner Journal of Computational Biology 22 (6), 528-545, 2015	103	2015
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads A Bankevich, AV Bzikadze, M Kolmogorov, D Antipov, PA Pevzner Nature biotechnology 40 (7), 1075-1081, 2022	77	2022
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads JG Sanders, S Nurk, RA Salido, J Minich, ZZ Xu, Q Zhu, C Martino, ... Genome biology 20, 1-14, 2019	61	2019
TruSPAdes: barcode assembly of TruSeq synthetic long reads A Bankevich, PA Pevzner Nature methods 13 (3), 248-250, 2016	54	2016
cloudSPAdes: assembly of synthetic long reads using de Bruijn graphs I Tolstoganov, A Bankevich, Z Chen, PA Pevzner Bioinformatics 35 (14), i61-i70, 2019	32	2019
Joint analysis of long and short reads enables accurate estimates of microbiome complexity A Bankevich, PA Pevzner Cell systems 7 (2), 192-200. e3, 2018	14*	2018
Bounds of the number of leaves of spanning trees AV Bankevich, DV Karpov Journal of Mathematical Sciences 184 (5), 564-572, 2012	12	2012
mosaicFlye: Resolving long mosaic repeats using long error-prone reads A Bankevich, P Pevzner biorxiv, 2020.01. 15.908285, 2020	9*	2020
ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs T Dvorkina, A Bankevich, A Sorokin, F Yang, B Adu-Oppong, R Williams, ... Microbiome 9, 1-14, 2021	6	2021
Bounds of the number of leaves of spanning trees in graphs without triangles AV Bankevich Journal of Mathematical Sciences 184 (5), 557-563, 2012	5	2012
Complete sequencing of ape genomes DA Yoo, A Rhie, P Hebbar, F Antonacci, GA Logsdon, SJ Solar, D Antipov, ... bioRxiv, 2024.07. 31.605654, 2024	2	2024
Unveiling Assembly Errors in Immunoglobulin Loci: A Comprehensive Evaluation of Long-read Genome Assemblies Across Vertebrates Y Zhu, C Watson, Y Safonova, M Pennell, A Bankevich bioRxiv, 2024		2024
Estimating the Quality of Genome Assembly from HiFi Reads A Bankevich Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 2024		2024
Detection and Comparative Analysis of Immunoglobulin Genes in Vertebrate Genomes Y Safonova, A Bankevich, M Pennell, C Watson Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 2024		2024
A Comprehensive Evaluation of Long-Read Whole-Genome Assembly Quality in the Immunoglobulin (IG) Loci across Diverse Vertebrate Species Y Zhu, C Watson, A Bankevich, M Pennell, Y Safonova Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 0

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