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Aly Azeem Khan
Aly Azeem Khan
Verified email at uchicago.edu - Homepage
Title
Cited by
Cited by
Year
Gender bias in autoimmunity is influenced by microbiota
L Yurkovetskiy, M Burrows, AA Khan, L Graham, P Volchkov, L Becker, ...
Immunity 39 (2), 400-412, 2013
6952013
Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs
AA Khan, D Betel, ML Miller, C Sander, CS Leslie, DS Marks
Nature biotechnology 27 (6), 549-555, 2009
5632009
Genome-wide RNA-mediated interference screen identifies miR-19 targets in Notch-induced T-cell acute lymphoblastic leukaemia
KJ Mavrakis, AL Wolfe, E Oricchio, T Palomero, K De Keersmaecker, ...
Nature cell biology 12 (4), 372-379, 2010
3822010
Transcriptome-wide miR-155 Binding Map Reveals Widespread Noncanonical MicroRNA Targeting
GB Loeb, AA Khan, D Canner, JB Hiatt, J Shendure, RB Darnell, ...
Molecular Cell, 2012
3382012
Lactobacillus rhamnosus GG-supplemented formula expands butyrate-producing bacterial strains in food allergic infants
R Berni Canani, N Sangwan, AT Stefka, R Nocerino, L Paparo, R Aitoro, ...
The ISME journal 10 (3), 742-750, 2016
3362016
A cooperative microRNA-tumor suppressor gene network in acute T-cell lymphoblastic leukemia (T-ALL)
KJ Mavrakis, J Van Der Meulen, AL Wolfe, X Liu, E Mets, T Taghon, ...
Nature genetics 43 (7), 673-678, 2011
3072011
A genomic regulatory element that directs assembly and function of immune-specific AP-1-IRF complexes
E Glasmacher, S Agrawal, AB Chang, TL Murphy, W Zeng, B Vander Lugt, ...
Science, 2012
3042012
Transcriptional programming of dendritic cells for enhanced MHC class II antigen presentation
B Vander Lugt, AA Khan, JA Hackney, S Agrawal, J Lesch, M Zhou, ...
Nature immunology 15 (2), 161-167, 2014
2452014
Specification of type 2 innate lymphocytes by the transcriptional determinant Gfi1
CJ Spooner, J Lesch, D Yan, AA Khan, A Abbas, V Ramirez-Carrozzi, ...
Nature immunology 14 (12), 1229-1236, 2013
1802013
Predicting protein–protein interactions through sequence-based deep learning
S Hashemifar, B Neyshabur, AA Khan, J Xu
Bioinformatics 34 (17), i802-i810, 2018
1712018
Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction
DK Wells, MM van Buuren, KK Dang, VM Hubbard-Lucey, KCF Sheehan, ...
Cell 183 (3), 818-834. e13, 2020
1262020
Induction of specific microRNAs inhibits cutaneous wound healing
I Pastar, AA Khan, O Stojadinovic, EA Lebrun, MC Medina, H Brem, ...
Journal of Biological Chemistry 287 (35), 29324-29335, 2012
1232012
miR-23∼ 27∼ 24 clusters control effector T cell differentiation and function
S Cho, CJ Wu, T Yasuda, LO Cruz, AA Khan, LL Lin, DT Nguyen, M Miller, ...
Journal of Experimental Medicine 213 (2), 235-249, 2016
1162016
Inferring transcriptional and microRNA‐mediated regulatory programs in glioblastoma
M Setty, K Helmy, AA Khan, J Silber, A Arvey, F Neezen, P Agius, JT Huse, ...
Molecular systems biology 8 (1), 605, 2012
1032012
siRNA off-target effects in genome-wide screens identify signaling pathway members
E Buehler, AA Khan, S Marine, M Rajaram, A Bahl, J Burchard, M Ferrer
Scientific reports 2 (1), 1-6, 2012
772012
BASIC: BCR assembly from single cells
S Canzar, KE Neu, Q Tang, PC Wilson, AA Khan
Bioinformatics 33 (3), 425-427, 2017
762017
Gene regulatory networks in the immune system
H Singh, AA Khan, AR Dinner
Trends in immunology 35 (5), 211-218, 2014
672014
Transcriptional determinants of tolerogenic and immunogenic states during dendritic cell maturation
B Vander Lugt, J Riddell, AA Khan, JA Hackney, J Lesch, J DeVoss, ...
Journal of Cell Biology 216 (3), 779-792, 2017
642017
Integrated genomic profiling expands clinical options for patients with cancer
N Beaubier, M Bontrager, R Huether, C Igartua, D Lau, R Tell, AM Bobe, ...
Nature biotechnology 37 (11), 1351-1360, 2019
622019
Clinical validation of the tempus xT next-generation targeted oncology sequencing assay
N Beaubier, R Tell, D Lau, JR Parsons, S Bush, J Perera, S Sorrells, ...
Oncotarget 10 (24), 2384, 2019
622019
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