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Jiří Filipovič
Jiří Filipovič
Research group leader, Institute of Computer Science, Masaryk University
Verified email at mail.muni.cz - Homepage
Title
Cited by
Cited by
Year
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport
J Stourac, O Vavra, P Kokkonen, J Filipovic, G Pinto, J Brezovsky, ...
Nucleic acids research 47 (W1), W414-W422, 2019
862019
Optimizing CUDA code by kernel fusion: application on BLAS
J Filipovič, M Madzin, J Fousek, L Matyska
The Journal of Supercomputing 71 (10), 3934-3957, 2015
752015
CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels
O Vavra, J Filipovic, J Plhak, D Bednar, SM Marques, J Brezovsky, ...
Bioinformatics 35 (23), 4986-4993, 2019
342019
CaverDock: a novel method for the fast analysis of ligand transport
J Filipovič, O Vávra, J Plhák, D Bednář, SM Marques, J Brezovský, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics 17 (5 …, 2019
34*2019
GPU Acceleration of equations assembly in finite elements method-preliminary results
J Filipovic, I Peterlik, J Fousek
SAAHPC: Symposium on Application Accelerators in HPC, 2009
292009
Automatic fusions of CUDA-GPU kernels for parallel map
J Fousek, J Filipovič, M Madzin
ACM SIGARCH Computer Architecture News 39 (4), 98-99, 2011
282011
Distributed construction of configuration spaces for real-time haptic deformation modeling
I Peterlik, J Filipovic
IEEE Transactions on Industrial Electronics 58 (8), 3205-3212, 2009
272009
A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit
F Petrovič, D Střelák, J Hozzová, J Ol’ha, R Trembecký, S Benkner, ...
Future Generation Computer Systems 108, 161-177, 2020
172020
Autotuning of OpenCL kernels with global optimizations
J Filipovič, F Petrovič, S Benkner
Proceedings of the 1st workshop on autotuning and aDaptivity approaches for …, 2017
162017
OpenCL kernel fusion for GPU, Xeon Phi and CPU
J Filipovic, S Benkner
2015 27th International Symposium on Computer Architecture and High …, 2015
152015
Fast screening of inhibitor binding/unbinding using novel software tool CaverDock
GP Pinto, O Vavra, J Filipovic, J Stourac, D Bednar, J Damborsky
Frontiers in chemistry 7, 709, 2019
142019
On-line precomputation algorithm for real-time haptic interaction with non-linear deformable bodies
J Filipovic, I Peterlik, L Matyska
World Haptics 2009-Third Joint EuroHaptics conference and Symposium on …, 2009
122009
Performance analysis and autotuning setup of the cuFFT library
D Střelák, J Filipovič
Proceedings of the 2nd Workshop on AutotuniNg and aDaptivity AppRoaches for …, 2018
112018
Image processing in Cryo-Electron Microscopy of Single Particles: the power of combining methods
COS Sorzano, A Jiménez-Moreno, D Maluenda, E Ramírez-Aportela, ...
Structural Proteomics, 257-289, 2021
82021
A GPU acceleration of 3-D Fourier reconstruction in cryo-EM
D Střelák, CÓS Sorzano, JM Carazo, J Filipovič
The International Journal of High Performance Computing Applications 33 (5 …, 2019
82019
FastGrid--The accelerated AutoGrid potential maps generation for molecular docking
M Prokop
Computing and Informatics 29 (6+), 1325-1336, 2010
8*2010
Medium-grained functions mapping using modern GPUs
J Filipovic, J Fousek
Proceedings of the symposium on application accelerators in high performance …, 2010
82010
DeepAlign, a 3D alignment method based on regionalized deep learning for Cryo-EM
A Jiménez-Moreno, D Střelák, J Filipovič, JM Carazo, CÓS Sorzano
Journal of Structural Biology 213 (2), 107712, 2021
72021
Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning
GP Pinto, O Vavra, SM Marques, J Filipovic, D Bednar, J Damborsky
Computational and structural biotechnology journal 19, 3187-3197, 2021
72021
Automatically optimized GPU acceleration of element subroutines in finite element method
J Filipovic, J Fousek, B Lakomý, M Madzin
2012 Symposium on Application Accelerators in High Performance Computing …, 2012
62012
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Articles 1–20