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Bruno Contreras-Moreira
Bruno Contreras-Moreira
Spanish National Research Council, Estación Experimental de Aula Dei
Verified email at eead.csic.es - Homepage
Title
Cited by
Cited by
Year
GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis
B Contreras-Moreira, P Vinuesa
Applied and environmental microbiology 79 (24), 7696-7701, 2013
6342013
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
S Gama-Castro, V Jiménez-Jacinto, M Peralta-Gil, A Santos-Zavaleta, ...
Nucleic acids research 36 (suppl_1), D120-D124, 2008
6092008
Ensembl Genomes 2020—enabling non-vertebrate genomic research
KL Howe, B Contreras-Moreira, N De Silva, G Maslen, W Akanni, J Allen, ...
Nucleic acids research 48 (D1), D689-D695, 2020
3402020
Genome-wide identification of transcription start sites, promoters and transcription factor binding sites in E. coli
A Mendoza-Vargas, L Olvera, M Olvera, R Grande, L Vega-Alvarado, ...
PloS one 4 (10), e7526, 2009
2812009
RSAT 2015: regulatory sequence analysis tools
A Medina-Rivera, M Defrance, O Sand, C Herrmann, ...
Nucleic acids research 43 (W1), W50-W56, 2015
2592015
OPCML at 11q25 is epigenetically inactivated and has tumor-suppressor function in epithelial ovarian cancer
GC Sellar, KP Watt, GJ Rabiasz, EA Stronach, L Li, EP Miller, CE Massie, ...
Nature genetics 34 (3), 337-343, 2003
2292003
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
SP Gordon, B Contreras-Moreira, DP Woods, DL Des Marais, D Burgess, ...
Nature communications 8 (1), 1-13, 2017
2152017
Domain fishing: a first step in protein comparative modelling
B Contreras-Moreira, PA Bates
Bioinformatics 18 (8), 1141-1142, 2002
2142002
Multilocus Sequence Analysis for Assessment of the Biogeography and Evolutionary Genetics of Four Bradyrhizobium Species That Nodulate Soybeans on the …
P Vinuesa, K Rojas-Jiménez, B Contreras-Moreira, SK Mahna, BN Prasad, ...
Applied and environmental microbiology 74 (22), 6987-6996, 2008
1982008
RSAT 2018: regulatory sequence analysis tools 20th anniversary
NTT Nguyen, B Contreras-Moreira, JA Castro-Mondragon, ...
Nucleic acids research 46 (W1), W209-W214, 2018
1552018
BARLEYMAP: physical and genetic mapping of nucleotide sequences and annotation of surrounding loci in barley
CP Cantalapiedra, R Boudiar, AM Casas, E Igartua, B Contreras-Moreira
Molecular breeding 35 (1), 1-11, 2015
822015
3D-footprint: a database for the structural analysis of protein–DNA complexes
B Contreras-Moreira
Nucleic Acids Research 38 (suppl_1), D91-D97, 2010
812010
GET_PHYLOMARKERS, a software package to select optimal orthologous clusters for phylogenomics and inferring pan-genome phylogenies, used for a critical geno-taxonomic revision …
P Vinuesa, LE Ochoa-Sánchez, B Contreras-Moreira
Frontiers in microbiology 9, 771, 2018
802018
footprintDB: a database of transcription factors with annotated cis elements and binding interfaces
A Sebastian, B Contreras-Moreira
Bioinformatics 30 (2), 258-265, 2014
712014
Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes
R Sancho, CP Cantalapiedra, D López‐Alvarez, SP Gordon, JP Vogel, ...
New Phytologist 218 (4), 1631-1644, 2018
672018
OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors
TS Serra, DD Figueiredo, AM Cordeiro, DM Almeida, T Lourenço, ...
Plant Molecular Biology 82 (4), 439-455, 2013
652013
A roadmap for gene functional characterisation in crops with large genomes: lessons from polyploid wheat
NM Adamski, P Borrill, J Brinton, SA Harrington, C Marchal, AR Bentley, ...
Elife 9, e55646, 2020
612020
Analysis of plant pan-genomes and transcriptomes with GET_HOMOLOGUES-EST, a clustering solution for sequences of the same species
B Contreras-Moreira, CP Cantalapiedra, MJ García-Pereira, SP Gordon, ...
Frontiers in plant science 8, 184, 2017
572017
In silico protein recombination: enhancing template and sequence alignment selection for comparative protein modelling
B Contreras-Moreira, PW Fitzjohn, PA Bates
Journal of molecular biology 328 (3), 593-608, 2003
572003
Analysis of the DNA-binding activities of the Arabidopsis R2R3-MYB transcription factor family by one-hybrid experiments in yeast
Z Kelemen, A Sebastian, W Xu, D Grain, F Salsac, A Avon, N Berger, ...
PloS one 10 (10), e0141044, 2015
562015
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