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Julia Koehler Leman
Julia Koehler Leman
Project Director, Open Molecular Software Foundation
Verified email at omsf.io
Title
Cited by
Cited by
Year
Structure-based protein function prediction using graph convolutional networks
V Gligorijević, PD Renfrew, T Kosciolek, JK Leman, D Berenberg, ...
Nature Communications 12 (1), 1-14, 2021
6712021
Macromolecular modeling and design in Rosetta: recent methods and frameworks
JK Leman, BD Weitzner, SM Lewis, J Adolf-Bryfogle, N Alam, RF Alford, ...
Nature Methods, 1-14, 2020
6682020
Expanding the utility of NMR restraints with paramagnetic compounds: background and practical aspects
J Koehler, J Meiler
Progress in nuclear magnetic resonance spectroscopy 59 (4), 360-389, 2011
2142011
An integrated framework advancing membrane protein modeling and design
RF Alford, JK Leman, BD Weitzner, AM Duran, DC Tilley, A Elazar, ...
PLoS Comput Biol 11 (9), e1004398, 2015
1762015
Computational modeling of membrane proteins
J Koehler Leman, MB Ulmschneider, JJ Gray
Proteins: Structure, Function, and Bioinformatics 83 (1), 1-24, 2015
1242015
Simultaneous prediction of protein secondary structure and transmembrane spans
JK Leman, R Mueller, M Karakas, N Woetzel, J Meiler
Proteins: Structure, Function, and Bioinformatics 81 (7), 1127-1140, 2013
842013
A unified hydrophobicity scale for multispan membrane proteins
J Koehler, N Woetzel, R Staritzbichler, CR Sanders, J Meiler
Proteins: Structure, Function, and Bioinformatics 76 (1), 13-29, 2009
672009
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework
G Glusman, PW Rose, A Prlić, J Dougherty, JM Duarte, AS Hoffman, ...
Genome medicine 9, 1-10, 2017
612017
Specificity and Speed: Tethered Photopharmacology
P Leippe, J Koehler Leman, D Trauner
Biochemistry 56 (39), 5214-5220, 2017
492017
Structural Model of the Membrane‐Bound C Terminus of Lipid‐Modified Human N‐Ras Protein
G Reuther, KT Tan, J Köhler, C Nowak, A Pampel, K Arnold, J Kuhlmann, ...
Angewandte Chemie International Edition 45 (32), 5387-5390, 2006
492006
Expanding the toolkit for membrane protein modeling in Rosetta
J Koehler Leman, BK Mueller, JJ Gray
Bioinformatics 33 (5), 754-756, 2016
432016
Protein remote homology detection and structural alignment using deep learning
T Hamamsy, JT Morton, R Blackwell, D Berenberg, N Carriero, ...
Nature Biotechnology, 1-11, 2023
422023
Computational prediction of the heterodimeric and higher-order structure of gpE1/gpE2 envelope glycoproteins encoded by hepatitis C virus
H Freedman, MR Logan, D Hockman, J Koehler Leman, JLM Law, ...
Journal of virology 91 (8), e02309-16, 2017
422017
Lysophospholipid micelles sustain the stability and catalytic activity of diacylglycerol kinase in the absence of lipids
J Koehler, ES Sulistijo, M Sakakura, HJ Kim, CD Ellis, CR Sanders
Biochemistry 49 (33), 7089-7099, 2010
422010
Sequence-structure-function relationships in the microbial protein universe
J Koehler Leman, P Szczerbiak, PD Renfrew, V Gligorijevic, D Berenberg, ...
Nature Communications 14 (1), 2351, 2023
392023
Better together: Elements of successful scientific software development in a distributed collaborative community
J Koehler Leman, BD Weitzner, PD Renfrew, SM Lewis, R Moretti, ...
PLOS Computational Biology 16 (5), e1007507, 2020
362020
Improving loop modeling of the antibody complementarity-determining region 3 using knowledge-based restraints
JA Finn, J Koehler Leman, JR Willis, A Cisneros III, JE Crowe Jr, J Meiler
PloS one 11 (5), e0154811, 2016
312016
Capturing conformational states in proteins using sparse paramagnetic NMR data
KB Pilla, JK Leman, G Otting, T Huber
PLoS One 10 (5), e0127053, 2015
312015
Integrative protein modeling in RosettaNMR from sparse paramagnetic restraints
G Kuenze, R Bonneau, JK Leman, J Meiler
Structure 27 (11), 1721-1734. e5, 2019
272019
Computing structure-based lipid accessibility of membrane proteins with mp_lipid_acc in RosettaMP
JK Leman, S Lyskov, R Bonneau
BMC bioinformatics 18 (1), 115, 2017
262017
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Articles 1–20