| Pan-genome analyses of model fungal species CGP McCarthy, DA Fitzpatrick Microbial genomics 5 (2), e000243, 2019 | 105 | 2019 |
| Phylogenomic reconstruction of the oomycete phylogeny derived from 37 genomes CGP McCarthy, DA Fitzpatrick Msphere 2 (2), 10.1128/msphere. 00095-17, 2017 | 89 | 2017 |
| Antibiotic resistomes of healthy pig faecal metagenomes A Joyce, CGP McCarthy, S Murphy, F Walsh Microbial Genomics 5 (5), e000272, 2019 | 37 | 2019 |
| Proteome and allergenome of the European house dust mite Dermatophagoides pteronyssinus R Waldron, J McGowan, N Gordon, C McCarthy, EB Mitchell, ... PLoS One 14 (5), e0216171, 2019 | 34 | 2019 |
| Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching T Hopes, K Norris, M Agapiou, CGP McCarthy, PA Lewis, MJ O’Connell, ... Nucleic acids research 50 (4), 2240-2257, 2022 | 28 | 2022 |
| Systematic search for evidence of interdomain horizontal gene transfer from prokaryotes to oomycete lineages CGP McCarthy, DA Fitzpatrick MSphere 1 (5), 10.1128/msphere. 00195-16, 2016 | 25* | 2016 |
| Genome analysis of the yeast Diutina catenulata, a member of the Debaryomycetaceae/Metschnikowiaceae (CTG-Ser) clade CE O’Brien, CGP McCarthy, AE Walshe, DR Shaw, DA Sumski, ... PLoS One 13 (6), e0198957, 2018 | 22 | 2018 |
| Draft Genome Sequence of Dermatophagoides pteronyssinus, the European House Dust Mite R Waldron, J McGowan, N Gordon, C McCarthy, EB Mitchell, S Doyle, ... Genome Announcements 5 (32), 10.1128/genomea. 00789-17, 2017 | 21 | 2017 |
| Multiple approaches to phylogenomic reconstruction of the fungal kingdom CGP McCarthy, DA Fitzpatrick Advances in genetics 100, 211-266, 2017 | 20 | 2017 |
| Whole Genome Sequence of the Commercially Relevant Mushroom Strain Agaricus bisporus var. bisporus ARP23 E O’Connor, J McGowan, CGP McCarthy, A Amini, H Grogan, ... G3: Genes, Genomes, Genetics 9 (10), 3057-3066, 2019 | 19 | 2019 |
| Pangloss: a tool for pan-genome analysis of microbial eukaryotes CGP McCarthy, DA Fitzpatrick Genes 10 (7), 521, 2019 | 15 | 2019 |
| Evolutionary, structural and functional analysis of the caleosin/peroxygenase gene family in the Fungi F Rahman, M Hassan, A Hanano, DA Fitzpatrick, CGP McCarthy, ... BMC genomics 19, 1-24, 2018 | 15 | 2018 |
| Filtering artifactual signal increases support for Xenacoelomorpha and Ambulacraria sister relationship in the animal tree of life PO Mulhair, CGP McCarthy, K Siu-Ting, CJ Creevey, MJ O’Connell Current Biology 32 (23), 5180-5188. e3, 2022 | 10 | 2022 |
| Improving orthologous signal and model fit in datasets addressing the root of the animal phylogeny CGP McCarthy, PO Mulhair, K Siu-Ting, CJ Creevey, MJ O’Connell Molecular Biology and Evolution 40 (1), msac276, 2023 | 8 | 2023 |
| Expanded phylogeny of extremely halophilic archaea shows multiple independent adaptations to hypersaline environments BA Baker, A Gutiérrez-Preciado, Á Rodríguez del Río, CGP McCarthy, ... Nature Microbiology, 1-12, 2024 | 2* | 2024 |
