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Hagen Tilgner
Hagen Tilgner
PI at Weill Cornell Medicine in New York City
Verified email at med.cornell.edu - Homepage
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Cited by
Year
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57, 2012
174952012
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
58142012
The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression
T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ...
Genome research 22 (9), 1775-1789, 2012
55432012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biology 9 (4), e1001046, 2011
8782011
SynGO: an evidence-based, expert-curated knowledge base for the synapse
F Koopmans, P van Nierop, M Andres-Alonso, A Byrnes, T Cijsouw, ...
Neuron 103 (2), 217-234. e4, 2019
7542019
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS biology 9 (4), 2011
6882011
A single-molecule long-read survey of the human transcriptome
D Sharon, H Tilgner, F Grubert, M Snyder
Nature biotechnology 31 (11), 1009-1014, 2013
6842013
Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
H Tilgner, DG Knowles, R Johnson, CA Davis, S Chakrabortty, S Djebali, ...
Genome research 22 (9), 1616-1625, 2012
5512012
Nucleosome positioning as a determinant of exon recognition
H Tilgner, C Nikolaou, S Althammer, M Sammeth, M Beato, J Valcárcel, ...
Nature structural & molecular biology 16 (9), 996-1001, 2009
5512009
Single-cell isoform RNA sequencing characterizes isoforms in thousands of cerebellar cells
I Gupta, PG Collier, B Haase, A Mahfouz, A Joglekar, T Floyd, ...
Nature biotechnology 36 (12), 1197-1202, 2018
3302018
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis
SME Sahraeian, M Mohiyuddin, R Sebra, H Tilgner, PT Afshar, KF Au, ...
Nature communications 8 (1), 59, 2017
3112017
Defining a personal, allele-specific, and single-molecule long-read transcriptome
H Tilgner, F Grubert, D Sharon, MP Snyder
Proceedings of the National Academy of Sciences 111 (27), 9869-9874, 2014
2752014
Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans
C Cenik, ES Cenik, GW Byeon, F Grubert, SI Candille, D Spacek, ...
Genome research 25 (11), 1610-1621, 2015
2482015
Comprehensive transcriptome analysis using synthetic long-read sequencing reveals molecular co-association of distant splicing events
H Tilgner, F Jahanbani, T Blauwkamp, A Moshrefi, E Jaeger, F Chen, ...
Nature biotechnology 33 (7), 736-742, 2015
2212015
A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain
A Joglekar, A Prjibelski, A Mahfouz, P Collier, S Lin, AK Schlusche, ...
Nature Communications 12 (1), 463, 2021
1752021
Interplay between BRCA1 and RHAMM regulates epithelial apicobasal polarization and may influence risk of breast cancer
CA Maxwell, J Benítez, L Gómez-Baldó, A Osorio, N Bonifaci, ...
PLoS biology 9 (11), e1001199, 2011
1382011
Single-nuclei isoform RNA sequencing unlocks barcoded exon connectivity in frozen brain tissue
SA Hardwick, W Hu, A Joglekar, L Fan, PG Collier, C Foord, J Balacco, ...
Nature biotechnology 40 (7), 1082-1092, 2022
972022
Schizophrenia is defined by cell-specific neuropathology and multiple neurodevelopmental mechanisms in patient-derived cerebral organoids
M Notaras, A Lodhi, F Dündar, P Collier, NM Sayles, H Tilgner, ...
Molecular Psychiatry 27 (3), 1416-1434, 2022
952022
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
FJ Pardo-Palacios, D Wang, F Reese, M Diekhans, S Carbonell-Sala, ...
Nature methods, 1-15, 2024
882024
Accurate isoform discovery with IsoQuant using long reads
AD Prjibelski, A Mikheenko, A Joglekar, A Smetanin, J Jarroux, ...
Nature Biotechnology 41 (7), 915-918, 2023
882023
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